Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002894

Experiment: Plant outgrowth control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant outgrowth control
3,272,644	-		ABIE53_002893	0.33	+0.0
3,272,644	-		ABIE53_002893	0.33	+2.5
3,273,071	+		ABIE53_002893	0.80	+2.0
3,273,072	-		ABIE53_002893	0.81	+0.1
3,273,243	+				+1.8
3,273,243	+				-2.0
3,273,243	+				-2.3
3,273,244	-				-2.7
3,273,244	-				-1.6
3,273,244	-				+1.0
3,273,244	-				-1.4
3,273,356	+				-1.7
3,273,356	+				+1.0
3,273,356	+				-1.4
3,273,357	-				+2.5
3,273,366	+				-0.8
3,273,409	+				-2.3
3,273,410	-				+0.0
3,273,410	-				+1.5
3,273,570	+				-1.5
3,273,570	+				-0.9
3,273,570	+				-3.1
3,273,570	+				-2.1
3,273,570	+				-0.1
3,273,570	+				-1.0
3,273,570	+				-0.5
3,273,570	+				+1.0
3,273,570	+				+2.5
3,273,571	-				-0.4
3,273,571	-				+2.9
3,273,571	-				+0.9
3,273,571	-				+1.4
3,273,571	-				-0.1
3,273,571	-				-0.5
3,273,571	-				-0.3
3,273,571	-				-0.9
3,273,571	-				-0.9
3,273,571	-				-0.3
3,273,686	+		ABIE53_002894	0.15	-1.3
3,273,687	-		ABIE53_002894	0.15	-1.0
3,273,750	+		ABIE53_002894	0.19	+3.0
3,273,750	+		ABIE53_002894	0.19	-0.3
3,273,750	+		ABIE53_002894	0.19	+0.8
3,273,751	-		ABIE53_002894	0.19	+0.5
3,273,751	-		ABIE53_002894	0.19	+4.9
3,273,751	-		ABIE53_002894	0.19	-2.3
3,273,782	+		ABIE53_002894	0.20	-1.6
3,273,782	+		ABIE53_002894	0.20	+2.5
3,273,782	+		ABIE53_002894	0.20	+5.1
3,273,783	-		ABIE53_002894	0.20	+0.3
3,274,107	+		ABIE53_002894	0.37	+0.4
3,274,107	+		ABIE53_002894	0.37	-0.7
3,274,107	+		ABIE53_002894	0.37	-1.1
3,274,107	+		ABIE53_002894	0.37	+3.4
3,274,108	-		ABIE53_002894	0.37	-2.8
3,274,108	-		ABIE53_002894	0.37	-0.3
3,274,108	-		ABIE53_002894	0.37	-0.6
3,274,108	-		ABIE53_002894	0.37	-1.9
3,274,108	-		ABIE53_002894	0.37	-0.6
3,274,110	+		ABIE53_002894	0.37	-2.6
3,274,110	+		ABIE53_002894	0.37	+2.5
3,274,110	+		ABIE53_002894	0.37	+0.0
3,274,111	-		ABIE53_002894	0.37	+0.1
3,274,111	-		ABIE53_002894	0.37	+0.7
3,274,320	+		ABIE53_002894	0.47	-0.2
3,274,433	+		ABIE53_002894	0.53	+1.7
3,274,434	-		ABIE53_002894	0.53	+1.8
3,274,443	-		ABIE53_002894	0.54	+3.9
3,274,621	+		ABIE53_002894	0.63	-2.0
3,274,621	+		ABIE53_002894	0.63	+1.5
3,274,621	+		ABIE53_002894	0.63	-3.5
3,274,621	+		ABIE53_002894	0.63	-2.0
3,274,621	+		ABIE53_002894	0.63	-0.3
3,274,621	+		ABIE53_002894	0.63	-3.5
3,274,621	+		ABIE53_002894	0.63	-2.4
3,274,621	+		ABIE53_002894	0.63	+0.5
3,274,621	+		ABIE53_002894	0.63	-0.2
3,274,621	+		ABIE53_002894	0.63	-0.3
3,274,621	+		ABIE53_002894	0.63	+1.4
3,274,622	-		ABIE53_002894	0.63	+3.1
3,274,622	-		ABIE53_002894	0.63	-1.0
3,274,622	-		ABIE53_002894	0.63	-3.3
3,274,622	-		ABIE53_002894	0.63	-0.8
3,274,622	-		ABIE53_002894	0.63	+1.1
3,274,622	-		ABIE53_002894	0.63	-1.7
3,274,843	-		ABIE53_002894	0.74	+0.3
3,274,843	-		ABIE53_002894	0.74	-0.2
3,274,843	-		ABIE53_002894	0.74	-2.2
3,274,861	+		ABIE53_002894	0.75	-0.4
3,274,861	+		ABIE53_002894	0.75	+0.2
3,274,861	+		ABIE53_002894	0.75	+2.5
3,274,861	+		ABIE53_002894	0.75	-0.0
3,274,861	+		ABIE53_002894	0.75	-1.7
3,274,861	+		ABIE53_002894	0.75	+1.2
3,274,862	-		ABIE53_002894	0.75	+0.0
3,274,862	-		ABIE53_002894	0.75	+0.2
3,274,862	-		ABIE53_002894	0.75	-4.0
3,274,862	-		ABIE53_002894	0.75	-0.2
3,274,862	-		ABIE53_002894	0.75	-0.0
3,274,862	-		ABIE53_002894	0.75	-0.8
3,274,962	+		ABIE53_002894	0.80	-0.8
3,274,963	-		ABIE53_002894	0.80	+1.2
3,275,008	-		ABIE53_002894	0.82	+2.5
3,275,103	+		ABIE53_002894	0.87	+1.5
3,275,121	+		ABIE53_002894	0.88	-0.2
3,275,121	+		ABIE53_002894	0.88	-0.6
3,275,124	-		ABIE53_002894	0.88	+0.1
3,275,124	-		ABIE53_002894	0.88	-1.6
3,275,355	+				+4.5
3,275,387	+				-1.1
3,275,388	-				-1.8
3,275,388	-				-0.9
3,275,388	-				-0.6
3,275,407	+				+0.5
3,275,407	+				-0.7
3,275,407	+				-0.5
3,275,408	-				-1.3
3,275,408	-				-0.5
3,275,450	-				-1.4
3,275,460	-				+0.1
3,275,595	+		ABIE53_002895	0.12	+1.5
3,275,595	+		ABIE53_002895	0.12	-1.5
3,275,596	-		ABIE53_002895	0.12	-2.0
3,275,616	+		ABIE53_002895	0.14	-0.3
3,275,616	+		ABIE53_002895	0.14	-0.5
3,275,616	+		ABIE53_002895	0.14	+1.1
3,275,616	+		ABIE53_002895	0.14	-0.3
3,275,616	+		ABIE53_002895	0.14	-1.5
3,275,616	+		ABIE53_002895	0.14	-0.3
3,275,617	-		ABIE53_002895	0.14	-2.8
3,275,636	+		ABIE53_002895	0.15	+0.2
3,275,637	-		ABIE53_002895	0.15	-0.0
3,275,802	+		ABIE53_002895	0.26	-1.3
3,275,802	+		ABIE53_002895	0.26	-0.2
3,275,802	+		ABIE53_002895	0.26	-3.0
3,275,802	+		ABIE53_002895	0.26	-1.3
3,275,802	+		ABIE53_002895	0.26	-0.4
3,275,803	-		ABIE53_002895	0.26	+1.8
3,275,803	-		ABIE53_002895	0.26	-0.8
3,275,803	-		ABIE53_002895	0.26	+0.5
3,275,803	-		ABIE53_002895	0.26	-0.4
3,275,803	-		ABIE53_002895	0.26	+2.2
3,275,803	-		ABIE53_002895	0.26	+0.8
3,275,857	+		ABIE53_002895	0.30	-1.5
3,275,913	+		ABIE53_002895	0.34	-0.0
3,275,913	+		ABIE53_002895	0.34	-1.0
3,275,913	+		ABIE53_002895	0.34	-0.9
3,275,913	+		ABIE53_002895	0.34	+0.2
3,275,913	+		ABIE53_002895	0.34	+2.5
3,275,913	+		ABIE53_002895	0.34	-1.4
3,275,913	+		ABIE53_002895	0.34	-0.7
3,275,914	-		ABIE53_002895	0.34	-0.8
3,275,914	-		ABIE53_002895	0.34	-1.9
3,275,914	-		ABIE53_002895	0.34	-0.8
3,275,914	-		ABIE53_002895	0.34	-1.4
3,275,914	-		ABIE53_002895	0.34	-0.8
3,275,914	-		ABIE53_002895	0.34	-0.5
3,275,914	-		ABIE53_002895	0.34	+0.5
3,276,012	+		ABIE53_002895	0.41	-1.2
3,276,012	+		ABIE53_002895	0.41	-1.5
3,276,012	+		ABIE53_002895	0.41	-1.5
3,276,012	+		ABIE53_002895	0.41	-0.5
3,276,013	-		ABIE53_002895	0.41	-0.0
3,276,013	-		ABIE53_002895	0.41	+0.5
3,276,022	+		ABIE53_002895	0.42	-2.7
3,276,099	+		ABIE53_002895	0.47	+2.5
3,276,207	+		ABIE53_002895	0.54	-1.5
3,276,345	+		ABIE53_002895	0.64	+2.5
3,276,345	+		ABIE53_002895	0.64	-0.0
3,276,345	+		ABIE53_002895	0.64	+0.4
3,276,346	-		ABIE53_002895	0.64	-0.6