Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000770 and ABIE53_000771 are separated by 67 nucleotides ABIE53_000771 and ABIE53_000772 are separated by 38 nucleotides ABIE53_000772 and ABIE53_000773 are separated by 193 nucleotides ABIE53_000773 and ABIE53_000774 are separated by 15 nucleotides
ABIE53_000770: ABIE53_000770 - DUF971 family protein, at 832,740 to 833,153
_000770
ABIE53_000771: ABIE53_000771 - demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 833,221 to 833,952
_000771
ABIE53_000772: ABIE53_000772 - putative lipid-binding transport protein (Tim44 family), at 833,991 to 834,989
_000772
ABIE53_000773: ABIE53_000773 - ubiquinone biosynthesis protein UbiJ, at 835,183 to 835,827
_000773
ABIE53_000774: ABIE53_000774 - ubiquinone biosynthesis protein, at 835,843 to 837,420
_000774
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.013 kb on + strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.014 kb on - strand, within ABIE53_000770 at 833.031 kb on + strand, within ABIE53_000770 at 833.070 kb on + strand, within ABIE53_000770 at 833.070 kb on + strand, within ABIE53_000770 at 833.070 kb on + strand, within ABIE53_000770 at 833.071 kb on - strand, within ABIE53_000770 at 833.071 kb on - strand, within ABIE53_000770 at 833.108 kb on + strand, within ABIE53_000770 at 833.108 kb on + strand, within ABIE53_000770 at 833.109 kb on - strand, within ABIE53_000770 at 833.154 kb on + strand at 833.154 kb on + strand at 833.154 kb on + strand at 833.154 kb on + strand at 833.154 kb on + strand at 833.155 kb on - strand at 833.155 kb on - strand at 833.189 kb on + strand at 833.189 kb on + strand at 833.189 kb on + strand at 833.189 kb on + strand at 833.189 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.947 kb on + strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.948 kb on - strand at 833.950 kb on + strand at 833.950 kb on + strand at 833.950 kb on + strand at 833.950 kb on + strand at 833.951 kb on - strand at 833.951 kb on - strand at 833.951 kb on - strand at 833.959 kb on + strand at 834.010 kb on + strand at 834.010 kb on + strand at 834.010 kb on + strand at 834.010 kb on + strand at 834.010 kb on + strand at 834.011 kb on - strand at 834.021 kb on - strand at 834.021 kb on - strand at 834.021 kb on - strand at 834.236 kb on + strand, within ABIE53_000772 at 834.237 kb on - strand, within ABIE53_000772 at 834.237 kb on - strand, within ABIE53_000772 at 834.284 kb on + strand, within ABIE53_000772 at 834.284 kb on + strand, within ABIE53_000772 at 834.284 kb on + strand, within ABIE53_000772 at 834.443 kb on + strand, within ABIE53_000772 at 834.443 kb on + strand, within ABIE53_000772 at 834.444 kb on - strand, within ABIE53_000772 at 834.459 kb on + strand, within ABIE53_000772 at 834.460 kb on - strand, within ABIE53_000772 at 834.460 kb on - strand, within ABIE53_000772 at 834.501 kb on + strand, within ABIE53_000772 at 834.502 kb on - strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.503 kb on + strand, within ABIE53_000772 at 834.504 kb on - strand, within ABIE53_000772 at 834.504 kb on - strand, within ABIE53_000772 at 834.504 kb on - strand, within ABIE53_000772 at 834.528 kb on + strand, within ABIE53_000772 at 834.528 kb on + strand, within ABIE53_000772 at 834.528 kb on + strand, within ABIE53_000772 at 834.529 kb on - strand, within ABIE53_000772 at 834.530 kb on + strand, within ABIE53_000772 at 834.530 kb on + strand, within ABIE53_000772 at 834.530 kb on + strand, within ABIE53_000772 at 834.530 kb on + strand, within ABIE53_000772 at 834.531 kb on - strand, within ABIE53_000772 at 834.552 kb on + strand, within ABIE53_000772 at 834.552 kb on + strand, within ABIE53_000772 at 834.553 kb on - strand, within ABIE53_000772 at 834.553 kb on - strand, within ABIE53_000772 at 834.553 kb on - strand, within ABIE53_000772 at 834.553 kb on - strand, within ABIE53_000772 at 834.657 kb on + strand, within ABIE53_000772 at 834.657 kb on + strand, within ABIE53_000772 at 834.657 kb on + strand, within ABIE53_000772 at 834.658 kb on - strand, within ABIE53_000772 at 834.658 kb on - strand, within ABIE53_000772 at 834.658 kb on - strand, within ABIE53_000772 at 834.658 kb on - strand, within ABIE53_000772 at 834.695 kb on + strand, within ABIE53_000772 at 834.695 kb on + strand, within ABIE53_000772 at 834.696 kb on - strand, within ABIE53_000772 at 834.696 kb on - strand, within ABIE53_000772 at 834.697 kb on + strand, within ABIE53_000772 at 834.841 kb on - strand, within ABIE53_000772 at 834.841 kb on - strand, within ABIE53_000772 at 834.841 kb on - strand, within ABIE53_000772 at 834.841 kb on - strand, within ABIE53_000772 at 835.088 kb on + strand at 835.089 kb on - strand at 835.127 kb on + strand at 835.127 kb on + strand at 835.127 kb on + strand at 835.127 kb on + strand at 835.127 kb on + strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.132 kb on + strand at 835.825 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand at 835.842 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 833,013 + ABIE53_000770 0.66 -1.1 833,013 + ABIE53_000770 0.66 +0.7 833,013 + ABIE53_000770 0.66 +0.4 833,013 + ABIE53_000770 0.66 -0.7 833,013 + ABIE53_000770 0.66 +0.3 833,013 + ABIE53_000770 0.66 -0.7 833,013 + ABIE53_000770 0.66 +0.8 833,013 + ABIE53_000770 0.66 +2.6 833,013 + ABIE53_000770 0.66 +1.0 833,013 + ABIE53_000770 0.66 +0.6 833,013 + ABIE53_000770 0.66 -1.0 833,014 - ABIE53_000770 0.66 -1.1 833,014 - ABIE53_000770 0.66 -0.2 833,014 - ABIE53_000770 0.66 +0.6 833,014 - ABIE53_000770 0.66 +1.3 833,014 - ABIE53_000770 0.66 -0.6 833,014 - ABIE53_000770 0.66 -2.2 833,014 - ABIE53_000770 0.66 -0.4 833,014 - ABIE53_000770 0.66 -0.1 833,014 - ABIE53_000770 0.66 -0.2 833,014 - ABIE53_000770 0.66 -3.3 833,014 - ABIE53_000770 0.66 +1.3 833,014 - ABIE53_000770 0.66 -1.4 833,014 - ABIE53_000770 0.66 -0.5 833,031 + ABIE53_000770 0.70 +1.6 833,070 + ABIE53_000770 0.80 +0.2 833,070 + ABIE53_000770 0.80 +0.5 833,070 + ABIE53_000770 0.80 +0.3 833,071 - ABIE53_000770 0.80 -3.0 833,071 - ABIE53_000770 0.80 -0.8 833,108 + ABIE53_000770 0.89 +0.5 833,108 + ABIE53_000770 0.89 -1.7 833,109 - ABIE53_000770 0.89 +0.6 833,154 + +0.1 833,154 + -1.3 833,154 + +1.1 833,154 + -1.6 833,154 + -0.2 833,155 - -0.2 833,155 - +1.0 833,189 + -1.2 833,189 + +2.7 833,189 + -1.2 833,189 + -1.1 833,189 + +1.0 833,947 + -0.5 833,947 + -1.3 833,947 + +1.0 833,947 + -0.1 833,947 + +2.6 833,947 + +0.1 833,947 + -3.0 833,948 - -2.6 833,948 - -0.2 833,948 - -1.0 833,948 - -2.1 833,948 - -2.3 833,948 - -0.8 833,948 - -1.3 833,948 - -3.1 833,948 - +0.2 833,948 - +0.0 833,950 + -0.3 833,950 + +0.1 833,950 + +0.7 833,950 + -0.3 833,951 - -0.6 833,951 - -2.6 833,951 - -0.8 833,959 + -1.6 834,010 + -2.6 834,010 + +0.6 834,010 + +1.9 834,010 + -1.3 834,010 + -2.1 834,011 - -0.8 834,021 - -1.5 834,021 - -0.2 834,021 - -1.6 834,236 + ABIE53_000772 0.25 -0.9 834,237 - ABIE53_000772 0.25 +1.1 834,237 - ABIE53_000772 0.25 -3.1 834,284 + ABIE53_000772 0.29 -1.9 834,284 + ABIE53_000772 0.29 -1.7 834,284 + ABIE53_000772 0.29 -0.6 834,443 + ABIE53_000772 0.45 -0.5 834,443 + ABIE53_000772 0.45 -0.8 834,444 - ABIE53_000772 0.45 -1.4 834,459 + ABIE53_000772 0.47 -3.1 834,460 - ABIE53_000772 0.47 +0.6 834,460 - ABIE53_000772 0.47 -1.8 834,501 + ABIE53_000772 0.51 +0.1 834,502 - ABIE53_000772 0.51 -0.9 834,503 + ABIE53_000772 0.51 -1.8 834,503 + ABIE53_000772 0.51 +1.4 834,503 + ABIE53_000772 0.51 -1.4 834,503 + ABIE53_000772 0.51 -1.8 834,503 + ABIE53_000772 0.51 +2.6 834,503 + ABIE53_000772 0.51 -1.3 834,503 + ABIE53_000772 0.51 -1.3 834,503 + ABIE53_000772 0.51 -1.4 834,503 + ABIE53_000772 0.51 -0.9 834,504 - ABIE53_000772 0.51 -1.2 834,504 - ABIE53_000772 0.51 -1.1 834,504 - ABIE53_000772 0.51 -0.1 834,528 + ABIE53_000772 0.54 +0.1 834,528 + ABIE53_000772 0.54 +1.2 834,528 + ABIE53_000772 0.54 -1.7 834,529 - ABIE53_000772 0.54 -0.6 834,530 + ABIE53_000772 0.54 -0.4 834,530 + ABIE53_000772 0.54 +2.5 834,530 + ABIE53_000772 0.54 -0.6 834,530 + ABIE53_000772 0.54 -0.5 834,531 - ABIE53_000772 0.54 -1.0 834,552 + ABIE53_000772 0.56 -1.1 834,552 + ABIE53_000772 0.56 -0.4 834,553 - ABIE53_000772 0.56 -0.0 834,553 - ABIE53_000772 0.56 +0.4 834,553 - ABIE53_000772 0.56 -0.6 834,553 - ABIE53_000772 0.56 +1.0 834,657 + ABIE53_000772 0.67 -2.0 834,657 + ABIE53_000772 0.67 +4.2 834,657 + ABIE53_000772 0.67 -0.6 834,658 - ABIE53_000772 0.67 -2.0 834,658 - ABIE53_000772 0.67 -0.5 834,658 - ABIE53_000772 0.67 +0.2 834,658 - ABIE53_000772 0.67 -0.0 834,695 + ABIE53_000772 0.70 -1.1 834,695 + ABIE53_000772 0.70 +0.2 834,696 - ABIE53_000772 0.71 -1.6 834,696 - ABIE53_000772 0.71 -1.6 834,697 + ABIE53_000772 0.71 +0.2 834,841 - ABIE53_000772 0.85 -1.8 834,841 - ABIE53_000772 0.85 -1.3 834,841 - ABIE53_000772 0.85 +0.4 834,841 - ABIE53_000772 0.85 -0.0 835,088 + -1.3 835,089 - +2.6 835,127 + +1.4 835,127 + -2.1 835,127 + +0.5 835,127 + -2.1 835,127 + -0.2 835,128 - -1.3 835,128 - -1.1 835,128 - -0.5 835,128 - -0.8 835,128 - +1.6 835,128 - -0.5 835,128 - -1.2 835,128 - +1.1 835,132 + -1.4 835,132 + +3.6 835,132 + -0.9 835,132 + -1.1 835,132 + -0.0 835,132 + -1.8 835,132 + +1.4 835,132 + +1.1 835,132 + +0.3 835,132 + +0.6 835,132 + +1.2 835,132 + -2.0 835,132 + -0.4 835,825 + -0.3 835,842 + -0.6 835,842 + -0.5 835,842 + +0.6 835,842 + -0.3 835,842 + +1.0 835,842 + +0.1 835,842 + +0.5 835,842 + +1.6
Or see this region's nucleotide sequence