Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000797 and ABIE53_000798 are separated by 22 nucleotides ABIE53_000798 and ABIE53_000799 are separated by 5 nucleotides
ABIE53_000797: ABIE53_000797 - LPS-assembly protein, at 863,725 to 866,046
_000797
ABIE53_000798: ABIE53_000798 - peptidyl-prolyl cis-trans isomerase SurA, at 866,069 to 867,475
_000798
ABIE53_000799: ABIE53_000799 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 867,481 to 868,491
_000799
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 866.038 kb on + strand at 866.038 kb on + strand at 866.038 kb on + strand at 866.038 kb on + strand at 866.039 kb on - strand at 866.039 kb on - strand at 866.039 kb on - strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.109 kb on + strand at 866.110 kb on - strand at 866.110 kb on - strand at 866.639 kb on + strand, within ABIE53_000798 at 866.639 kb on + strand, within ABIE53_000798 at 866.639 kb on + strand, within ABIE53_000798 at 866.639 kb on + strand, within ABIE53_000798 at 866.639 kb on + strand, within ABIE53_000798 at 866.639 kb on + strand, within ABIE53_000798 at 867.158 kb on + strand, within ABIE53_000798 at 867.159 kb on - strand, within ABIE53_000798 at 867.159 kb on - strand, within ABIE53_000798 at 867.291 kb on - strand, within ABIE53_000798 at 867.296 kb on + strand, within ABIE53_000798 at 867.296 kb on + strand, within ABIE53_000798 at 867.430 kb on + strand at 867.437 kb on + strand at 867.437 kb on + strand at 867.437 kb on + strand at 867.437 kb on + strand at 867.437 kb on + strand at 867.438 kb on - strand at 867.438 kb on - strand at 867.705 kb on + strand, within ABIE53_000799 at 867.705 kb on + strand, within ABIE53_000799 at 867.706 kb on - strand, within ABIE53_000799 at 867.772 kb on + strand, within ABIE53_000799 at 867.772 kb on + strand, within ABIE53_000799 at 867.772 kb on + strand, within ABIE53_000799 at 867.772 kb on + strand, within ABIE53_000799 at 867.773 kb on - strand, within ABIE53_000799 at 867.773 kb on - strand, within ABIE53_000799 at 867.865 kb on - strand, within ABIE53_000799 at 867.885 kb on + strand, within ABIE53_000799 at 867.901 kb on + strand, within ABIE53_000799 at 867.901 kb on + strand, within ABIE53_000799 at 868.144 kb on + strand, within ABIE53_000799 at 868.194 kb on + strand, within ABIE53_000799 at 868.255 kb on + strand, within ABIE53_000799 at 868.318 kb on + strand, within ABIE53_000799 at 868.318 kb on + strand, within ABIE53_000799 at 868.319 kb on - strand, within ABIE53_000799
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 866,038 + -0.4 866,038 + -1.6 866,038 + -1.0 866,038 + +0.3 866,039 - -2.4 866,039 - -1.6 866,039 - -1.2 866,109 + +3.4 866,109 + -0.6 866,109 + -0.3 866,109 + -0.6 866,109 + +1.4 866,109 + -0.6 866,109 + -1.3 866,109 + +0.6 866,110 - -2.0 866,110 - -1.2 866,639 + ABIE53_000798 0.41 +1.4 866,639 + ABIE53_000798 0.41 -3.5 866,639 + ABIE53_000798 0.41 +0.8 866,639 + ABIE53_000798 0.41 -3.0 866,639 + ABIE53_000798 0.41 -1.9 866,639 + ABIE53_000798 0.41 -3.7 867,158 + ABIE53_000798 0.77 +1.0 867,159 - ABIE53_000798 0.77 -0.6 867,159 - ABIE53_000798 0.77 +2.4 867,291 - ABIE53_000798 0.87 +0.4 867,296 + ABIE53_000798 0.87 -2.5 867,296 + ABIE53_000798 0.87 +0.8 867,430 + -0.7 867,437 + -1.6 867,437 + -0.5 867,437 + -3.1 867,437 + -2.0 867,437 + -2.2 867,438 - -1.0 867,438 - -0.6 867,705 + ABIE53_000799 0.22 -0.5 867,705 + ABIE53_000799 0.22 -0.2 867,706 - ABIE53_000799 0.22 +0.2 867,772 + ABIE53_000799 0.29 -0.3 867,772 + ABIE53_000799 0.29 +1.5 867,772 + ABIE53_000799 0.29 -0.2 867,772 + ABIE53_000799 0.29 +0.6 867,773 - ABIE53_000799 0.29 -2.8 867,773 - ABIE53_000799 0.29 -0.5 867,865 - ABIE53_000799 0.38 +2.4 867,885 + ABIE53_000799 0.40 +1.9 867,901 + ABIE53_000799 0.42 -0.2 867,901 + ABIE53_000799 0.42 +0.2 868,144 + ABIE53_000799 0.66 -1.7 868,194 + ABIE53_000799 0.71 -0.2 868,255 + ABIE53_000799 0.77 +0.8 868,318 + ABIE53_000799 0.83 +0.5 868,318 + ABIE53_000799 0.83 +1.1 868,319 - ABIE53_000799 0.83 -1.2
Or see this region's nucleotide sequence