Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19565

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19560 and BWI76_RS19565 are separated by 152 nucleotidesBWI76_RS19565 and BWI76_RS19570 are separated by 200 nucleotides BWI76_RS19560: BWI76_RS19560 - beta-1,4-xylanase, at 4,089,668 to 4,090,501 _RS19560 BWI76_RS19565: BWI76_RS19565 - tRNA dihydrouridine(16) synthase DusC, at 4,090,654 to 4,091,592 _RS19565 BWI76_RS19570: BWI76_RS19570 - 3-hydroxybenzoate 6-hydroxylase, at 4,091,793 to 4,092,986 _RS19570 Position (kb) 4090 4091 4092Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4089.782 kb on + strand, within BWI76_RS19560at 4089.866 kb on - strand, within BWI76_RS19560at 4089.985 kb on - strand, within BWI76_RS19560at 4090.013 kb on - strand, within BWI76_RS19560at 4090.071 kb on - strand, within BWI76_RS19560at 4090.120 kb on + strand, within BWI76_RS19560at 4090.156 kb on - strand, within BWI76_RS19560at 4090.224 kb on - strand, within BWI76_RS19560at 4090.303 kb on + strand, within BWI76_RS19560at 4090.432 kb on - strandat 4090.436 kb on - strandat 4090.596 kb on - strandat 4090.715 kb on + strandat 4090.723 kb on - strandat 4090.723 kb on - strandat 4090.733 kb on + strandat 4090.856 kb on - strand, within BWI76_RS19565at 4090.858 kb on + strand, within BWI76_RS19565at 4090.906 kb on + strand, within BWI76_RS19565at 4091.197 kb on + strand, within BWI76_RS19565at 4091.311 kb on - strand, within BWI76_RS19565at 4091.436 kb on + strand, within BWI76_RS19565at 4091.444 kb on - strand, within BWI76_RS19565at 4091.636 kb on + strandat 4091.799 kb on - strandat 4091.872 kb on - strandat 4091.988 kb on - strand, within BWI76_RS19570at 4091.990 kb on - strand, within BWI76_RS19570at 4092.031 kb on + strand, within BWI76_RS19570at 4092.062 kb on - strand, within BWI76_RS19570at 4092.084 kb on + strand, within BWI76_RS19570at 4092.087 kb on - strand, within BWI76_RS19570

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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4,089,782 + BWI76_RS19560 0.14 +1.0
4,089,866 - BWI76_RS19560 0.24 -3.0
4,089,985 - BWI76_RS19560 0.38 -0.3
4,090,013 - BWI76_RS19560 0.41 +2.0
4,090,071 - BWI76_RS19560 0.48 +0.4
4,090,120 + BWI76_RS19560 0.54 -1.2
4,090,156 - BWI76_RS19560 0.59 +0.0
4,090,224 - BWI76_RS19560 0.67 +0.2
4,090,303 + BWI76_RS19560 0.76 -0.3
4,090,432 - -0.5
4,090,436 - -2.0
4,090,596 - +1.1
4,090,715 + +1.4
4,090,723 - -0.1
4,090,723 - +0.4
4,090,733 + +0.9
4,090,856 - BWI76_RS19565 0.22 +0.3
4,090,858 + BWI76_RS19565 0.22 +0.5
4,090,906 + BWI76_RS19565 0.27 +0.8
4,091,197 + BWI76_RS19565 0.58 +0.5
4,091,311 - BWI76_RS19565 0.70 +1.4
4,091,436 + BWI76_RS19565 0.83 +1.2
4,091,444 - BWI76_RS19565 0.84 +1.0
4,091,636 + +0.4
4,091,799 - -0.2
4,091,872 - -1.4
4,091,988 - BWI76_RS19570 0.16 -1.0
4,091,990 - BWI76_RS19570 0.16 -0.2
4,092,031 + BWI76_RS19570 0.20 +0.6
4,092,062 - BWI76_RS19570 0.23 -1.8
4,092,084 + BWI76_RS19570 0.24 -1.0
4,092,087 - BWI76_RS19570 0.25 -1.6

Or see this region's nucleotide sequence