Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17915

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17900 and BWI76_RS17905 are separated by 53 nucleotidesBWI76_RS17905 and BWI76_RS17910 are separated by 106 nucleotidesBWI76_RS17910 and BWI76_RS17915 are separated by 96 nucleotidesBWI76_RS17915 and BWI76_RS17920 are separated by 3 nucleotidesBWI76_RS17920 and BWI76_RS17925 are separated by 60 nucleotides BWI76_RS17900: BWI76_RS17900 - PTS mannose transporter subunit IID, at 3,723,421 to 3,724,272 _RS17900 BWI76_RS17905: BWI76_RS17905 - hypothetical protein, at 3,724,326 to 3,724,784 _RS17905 BWI76_RS17910: BWI76_RS17910 - hypothetical protein, at 3,724,891 to 3,725,112 _RS17910 BWI76_RS17915: BWI76_RS17915 - membrane protein, at 3,725,209 to 3,725,775 _RS17915 BWI76_RS17920: BWI76_RS17920 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 3,725,779 to 3,726,573 _RS17920 BWI76_RS17925: BWI76_RS17925 - peptidoglycan synthase, at 3,726,634 to 3,728,379 _RS17925 Position (kb) 3725 3726Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3724.210 kb on - strandat 3724.277 kb on - strandat 3724.348 kb on - strandat 3724.352 kb on - strandat 3724.383 kb on - strand, within BWI76_RS17905at 3724.432 kb on + strand, within BWI76_RS17905at 3724.432 kb on + strand, within BWI76_RS17905at 3724.440 kb on - strand, within BWI76_RS17905at 3724.450 kb on - strand, within BWI76_RS17905at 3724.465 kb on + strand, within BWI76_RS17905at 3724.466 kb on + strand, within BWI76_RS17905at 3724.488 kb on - strand, within BWI76_RS17905at 3724.526 kb on + strand, within BWI76_RS17905at 3724.527 kb on + strand, within BWI76_RS17905at 3724.527 kb on - strand, within BWI76_RS17905at 3724.551 kb on + strand, within BWI76_RS17905at 3724.551 kb on + strand, within BWI76_RS17905at 3724.554 kb on - strand, within BWI76_RS17905at 3724.557 kb on + strand, within BWI76_RS17905at 3724.558 kb on + strand, within BWI76_RS17905at 3724.564 kb on - strand, within BWI76_RS17905at 3724.564 kb on - strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strandat 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.567 kb on + strand, within BWI76_RS17905at 3724.575 kb on - strand, within BWI76_RS17905at 3724.575 kb on - strand, within BWI76_RS17905at 3724.575 kb on - strand, within BWI76_RS17905at 3724.575 kb on - strand, within BWI76_RS17905at 3724.599 kb on - strand, within BWI76_RS17905at 3724.601 kb on - strand, within BWI76_RS17905at 3724.603 kb on + strand, within BWI76_RS17905at 3724.603 kb on + strand, within BWI76_RS17905at 3724.603 kb on + strand, within BWI76_RS17905at 3724.619 kb on - strand, within BWI76_RS17905at 3724.684 kb on + strand, within BWI76_RS17905at 3724.692 kb on - strand, within BWI76_RS17905at 3724.712 kb on - strand, within BWI76_RS17905at 3724.801 kb on + strandat 3724.806 kb on + strandat 3724.806 kb on + strandat 3724.806 kb on + strandat 3724.806 kb on + strandat 3724.835 kb on - strandat 3724.840 kb on - strandat 3724.980 kb on + strand, within BWI76_RS17910at 3725.035 kb on - strand, within BWI76_RS17910at 3725.063 kb on - strand, within BWI76_RS17910at 3725.069 kb on + strand, within BWI76_RS17910at 3725.074 kb on + strand, within BWI76_RS17910at 3725.077 kb on - strand, within BWI76_RS17910at 3725.077 kb on - strand, within BWI76_RS17910at 3725.077 kb on - strand, within BWI76_RS17910at 3725.089 kb on + strand, within BWI76_RS17910at 3725.099 kb on + strandat 3725.099 kb on + strandat 3725.108 kb on - strandat 3725.109 kb on - strandat 3725.110 kb on + strandat 3725.118 kb on - strandat 3725.118 kb on - strandat 3725.189 kb on + strandat 3725.326 kb on + strand, within BWI76_RS17915at 3725.334 kb on - strand, within BWI76_RS17915at 3725.334 kb on - strand, within BWI76_RS17915at 3725.576 kb on + strand, within BWI76_RS17915at 3725.623 kb on + strand, within BWI76_RS17915at 3725.631 kb on - strand, within BWI76_RS17915at 3725.728 kb on - strandat 3725.743 kb on + strandat 3725.926 kb on - strand, within BWI76_RS17920at 3725.979 kb on + strand, within BWI76_RS17920at 3726.603 kb on + strandat 3726.611 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
remove
3,724,210 - +0.1
3,724,277 - +0.3
3,724,348 - -0.2
3,724,352 - -0.1
3,724,383 - BWI76_RS17905 0.12 +0.2
3,724,432 + BWI76_RS17905 0.23 -0.9
3,724,432 + BWI76_RS17905 0.23 +0.1
3,724,440 - BWI76_RS17905 0.25 +1.9
3,724,450 - BWI76_RS17905 0.27 -1.1
3,724,465 + BWI76_RS17905 0.30 +0.1
3,724,466 + BWI76_RS17905 0.31 +0.4
3,724,488 - BWI76_RS17905 0.35 +1.1
3,724,526 + BWI76_RS17905 0.44 -0.7
3,724,527 + BWI76_RS17905 0.44 +1.1
3,724,527 - BWI76_RS17905 0.44 +1.1
3,724,551 + BWI76_RS17905 0.49 -0.1
3,724,551 + BWI76_RS17905 0.49 +0.7
3,724,554 - BWI76_RS17905 0.50 -1.7
3,724,557 + BWI76_RS17905 0.50 -1.6
3,724,558 + BWI76_RS17905 0.51 +0.2
3,724,564 - BWI76_RS17905 0.52 -0.9
3,724,564 - BWI76_RS17905 0.52 +0.5
3,724,567 + BWI76_RS17905 0.53 +0.2
3,724,567 + -0.7
3,724,567 + BWI76_RS17905 0.53 -0.6
3,724,567 + BWI76_RS17905 0.53 -0.6
3,724,567 + BWI76_RS17905 0.53 +0.5
3,724,567 + BWI76_RS17905 0.53 +0.5
3,724,567 + BWI76_RS17905 0.53 -1.0
3,724,567 + BWI76_RS17905 0.53 -0.1
3,724,567 + BWI76_RS17905 0.53 +0.5
3,724,567 + BWI76_RS17905 0.53 -0.5
3,724,567 + BWI76_RS17905 0.53 -0.5
3,724,567 + BWI76_RS17905 0.53 -0.7
3,724,567 + BWI76_RS17905 0.53 +1.4
3,724,575 - BWI76_RS17905 0.54 -1.1
3,724,575 - BWI76_RS17905 0.54 -1.5
3,724,575 - BWI76_RS17905 0.54 +1.2
3,724,575 - BWI76_RS17905 0.54 +1.0
3,724,599 - BWI76_RS17905 0.59 -1.1
3,724,601 - BWI76_RS17905 0.60 +0.6
3,724,603 + BWI76_RS17905 0.60 +0.1
3,724,603 + BWI76_RS17905 0.60 -1.4
3,724,603 + BWI76_RS17905 0.60 +0.2
3,724,619 - BWI76_RS17905 0.64 +1.4
3,724,684 + BWI76_RS17905 0.78 -1.0
3,724,692 - BWI76_RS17905 0.80 +0.2
3,724,712 - BWI76_RS17905 0.84 -2.9
3,724,801 + +0.1
3,724,806 + -0.3
3,724,806 + +0.8
3,724,806 + +0.6
3,724,806 + +1.0
3,724,835 - -0.2
3,724,840 - +0.6
3,724,980 + BWI76_RS17910 0.40 -3.2
3,725,035 - BWI76_RS17910 0.65 -1.1
3,725,063 - BWI76_RS17910 0.77 -0.1
3,725,069 + BWI76_RS17910 0.80 -3.5
3,725,074 + BWI76_RS17910 0.82 -0.9
3,725,077 - BWI76_RS17910 0.84 -4.4
3,725,077 - BWI76_RS17910 0.84 -0.7
3,725,077 - BWI76_RS17910 0.84 -2.2
3,725,089 + BWI76_RS17910 0.89 -3.7
3,725,099 + -1.1
3,725,099 + -2.0
3,725,108 - -2.6
3,725,109 - -0.3
3,725,110 + -0.6
3,725,118 - -1.4
3,725,118 - -2.9
3,725,189 + -3.8
3,725,326 + BWI76_RS17915 0.21 -3.9
3,725,334 - BWI76_RS17915 0.22 -4.0
3,725,334 - BWI76_RS17915 0.22 -4.6
3,725,576 + BWI76_RS17915 0.65 -0.1
3,725,623 + BWI76_RS17915 0.73 -3.6
3,725,631 - BWI76_RS17915 0.74 -3.3
3,725,728 - -3.1
3,725,743 + -1.8
3,725,926 - BWI76_RS17920 0.18 +0.4
3,725,979 + BWI76_RS17920 0.25 -0.4
3,726,603 + -0.1
3,726,611 - -0.7

Or see this region's nucleotide sequence