Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12385

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12375 and BWI76_RS12380 are separated by 488 nucleotidesBWI76_RS12380 and BWI76_RS12385 are separated by 1 nucleotidesBWI76_RS12385 and BWI76_RS12390 are separated by 135 nucleotidesBWI76_RS12390 and BWI76_RS12395 are separated by 349 nucleotides BWI76_RS12375: BWI76_RS12375 - DNA-invertase hin, at 2,585,407 to 2,585,958 _RS12375 BWI76_RS12380: BWI76_RS12380 - DNA polymerase V subunit UmuD, at 2,586,447 to 2,586,866 _RS12380 BWI76_RS12385: BWI76_RS12385 - DNA polymerase V subunit UmuC, at 2,586,868 to 2,588,133 _RS12385 BWI76_RS12390: BWI76_RS12390 - antibiotic biosynthesis monooxygenase, at 2,588,269 to 2,588,568 _RS12390 BWI76_RS12395: BWI76_RS12395 - zinc-binding alcohol dehydrogenase, at 2,588,918 to 2,589,901 _RS12395 Position (kb) 2586 2587 2588 2589Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2586.058 kb on - strandat 2586.071 kb on + strandat 2586.188 kb on - strandat 2586.460 kb on - strandat 2586.478 kb on + strandat 2586.505 kb on + strand, within BWI76_RS12380at 2586.547 kb on - strand, within BWI76_RS12380at 2586.570 kb on - strand, within BWI76_RS12380at 2586.582 kb on + strand, within BWI76_RS12380at 2586.687 kb on + strand, within BWI76_RS12380at 2586.758 kb on + strand, within BWI76_RS12380at 2586.764 kb on + strand, within BWI76_RS12380at 2586.825 kb on - strandat 2586.827 kb on + strandat 2587.122 kb on - strand, within BWI76_RS12385at 2587.243 kb on + strand, within BWI76_RS12385at 2587.287 kb on + strand, within BWI76_RS12385at 2587.321 kb on + strand, within BWI76_RS12385at 2587.367 kb on + strand, within BWI76_RS12385at 2587.471 kb on + strand, within BWI76_RS12385at 2587.548 kb on - strand, within BWI76_RS12385at 2587.560 kb on + strand, within BWI76_RS12385at 2587.568 kb on - strandat 2587.810 kb on + strand, within BWI76_RS12385at 2587.963 kb on + strand, within BWI76_RS12385at 2588.096 kb on + strandat 2588.104 kb on - strandat 2588.116 kb on - strandat 2588.230 kb on - strandat 2588.365 kb on + strandat 2588.435 kb on + strand, within BWI76_RS12390at 2588.494 kb on + strand, within BWI76_RS12390at 2588.624 kb on - strandat 2588.624 kb on - strandat 2588.649 kb on - strandat 2588.675 kb on - strandat 2588.710 kb on + strandat 2588.951 kb on + strandat 2588.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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2,586,058 - -0.4
2,586,071 + +0.1
2,586,188 - -0.6
2,586,460 - -0.8
2,586,478 + -0.0
2,586,505 + BWI76_RS12380 0.14 -0.8
2,586,547 - BWI76_RS12380 0.24 -1.0
2,586,570 - BWI76_RS12380 0.29 -0.8
2,586,582 + BWI76_RS12380 0.32 -0.7
2,586,687 + BWI76_RS12380 0.57 -0.7
2,586,758 + BWI76_RS12380 0.74 -2.8
2,586,764 + BWI76_RS12380 0.75 -0.9
2,586,825 - -0.2
2,586,827 + -1.1
2,587,122 - BWI76_RS12385 0.20 -2.8
2,587,243 + BWI76_RS12385 0.30 -1.1
2,587,287 + BWI76_RS12385 0.33 -0.5
2,587,321 + BWI76_RS12385 0.36 -0.9
2,587,367 + BWI76_RS12385 0.39 +0.1
2,587,471 + BWI76_RS12385 0.48 -0.5
2,587,548 - BWI76_RS12385 0.54 +0.3
2,587,560 + BWI76_RS12385 0.55 -3.3
2,587,568 - -1.2
2,587,810 + BWI76_RS12385 0.74 -1.7
2,587,963 + BWI76_RS12385 0.86 +0.6
2,588,096 + -0.4
2,588,104 - -1.7
2,588,116 - -2.6
2,588,230 - -1.3
2,588,365 + -1.2
2,588,435 + BWI76_RS12390 0.55 -0.2
2,588,494 + BWI76_RS12390 0.75 -3.1
2,588,624 - -0.9
2,588,624 - -0.1
2,588,649 - +3.2
2,588,675 - -0.1
2,588,710 + +0.6
2,588,951 + -1.6
2,588,994 - -2.9

Or see this region's nucleotide sequence