Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11230

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11220 and BWI76_RS11225 are separated by 48 nucleotidesBWI76_RS11225 and BWI76_RS11230 are separated by 14 nucleotidesBWI76_RS11230 and BWI76_RS11235 are separated by 28 nucleotidesBWI76_RS11235 and BWI76_RS11240 are separated by 346 nucleotides BWI76_RS11220: BWI76_RS11220 - lipoprotein transporter subunit LolE, at 2,367,462 to 2,368,706 _RS11220 BWI76_RS11225: BWI76_RS11225 - N-acetylglucosamine kinase, at 2,368,755 to 2,369,666 _RS11225 BWI76_RS11230: BWI76_RS11230 - NAD-dependent deacylase, at 2,369,681 to 2,370,526 _RS11230 BWI76_RS11235: BWI76_RS11235 - hypothetical protein, at 2,370,555 to 2,370,860 _RS11235 BWI76_RS11240: BWI76_RS11240 - spermidine/putrescine ABC transporter substrate-binding protein PotD, at 2,371,207 to 2,372,253 _RS11240 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -2 -1 0 1 2at 2368.804 kb on - strandat 2369.610 kb on + strandat 2369.628 kb on + strandat 2369.636 kb on - strandat 2369.735 kb on + strandat 2369.988 kb on - strand, within BWI76_RS11230at 2370.211 kb on - strand, within BWI76_RS11230at 2370.335 kb on - strand, within BWI76_RS11230at 2370.442 kb on + strandat 2370.552 kb on + strandat 2370.560 kb on - strandat 2370.623 kb on + strand, within BWI76_RS11235at 2370.904 kb on + strandat 2371.030 kb on + strandat 2371.166 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
remove
2,368,804 - -0.5
2,369,610 + +0.0
2,369,628 + -0.3
2,369,636 - +0.5
2,369,735 + +0.4
2,369,988 - BWI76_RS11230 0.36 -0.4
2,370,211 - BWI76_RS11230 0.63 -0.1
2,370,335 - BWI76_RS11230 0.77 -0.6
2,370,442 + +1.0
2,370,552 + +1.0
2,370,560 - +0.8
2,370,623 + BWI76_RS11235 0.22 +2.1
2,370,904 + -2.0
2,371,030 + +0.3
2,371,166 - -0.2

Or see this region's nucleotide sequence