Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06485

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06475 and BWI76_RS06480 are separated by 11 nucleotidesBWI76_RS06480 and BWI76_RS06485 overlap by 1 nucleotidesBWI76_RS06485 and BWI76_RS06490 overlap by 11 nucleotides BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424 _RS06475 BWI76_RS06480: BWI76_RS06480 - cytochrome o ubiquinol oxidase subunit IV, at 1,361,436 to 1,361,765 _RS06480 BWI76_RS06485: BWI76_RS06485 - cytochrome o ubiquinol oxidase subunit III, at 1,361,765 to 1,362,376 _RS06485 BWI76_RS06490: BWI76_RS06490 - cytochrome ubiquinol oxidase subunit I, at 1,362,366 to 1,364,357 _RS06490 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1360.842 kb on + strand, within BWI76_RS06475at 1361.081 kb on - strand, within BWI76_RS06475at 1361.591 kb on - strand, within BWI76_RS06480at 1361.856 kb on - strand, within BWI76_RS06485at 1361.946 kb on + strand, within BWI76_RS06485at 1362.441 kb on - strandat 1362.686 kb on - strand, within BWI76_RS06490at 1363.047 kb on + strand, within BWI76_RS06490at 1363.073 kb on - strand, within BWI76_RS06490at 1363.232 kb on - strand, within BWI76_RS06490

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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1,360,842 + BWI76_RS06475 0.34 +1.0
1,361,081 - BWI76_RS06475 0.61 -1.9
1,361,591 - BWI76_RS06480 0.47 -2.4
1,361,856 - BWI76_RS06485 0.15 +1.0
1,361,946 + BWI76_RS06485 0.30 -3.4
1,362,441 - -2.9
1,362,686 - BWI76_RS06490 0.16 -0.2
1,363,047 + BWI76_RS06490 0.34 -3.8
1,363,073 - BWI76_RS06490 0.35 -2.3
1,363,232 - BWI76_RS06490 0.43 -3.1

Or see this region's nucleotide sequence