Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29365 and AO356_29370 are separated by 186 nucleotides AO356_29370 and AO356_29375 are separated by 104 nucleotides
AO356_29365: AO356_29365 - LysR family transcriptional regulator, at 6,830,192 to 6,831,106
_29365
AO356_29370: AO356_29370 - ABC transporter substrate-binding protein, at 6,831,293 to 6,832,813
_29370
AO356_29375: AO356_29375 - ABC transporter permease, at 6,832,918 to 6,833,835
_29375
Position (kb)
6831
6832
6833 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6830.407 kb on + strand, within AO356_29365 at 6830.407 kb on + strand, within AO356_29365 at 6830.408 kb on - strand, within AO356_29365 at 6830.408 kb on - strand, within AO356_29365 at 6830.410 kb on - strand, within AO356_29365 at 6830.424 kb on + strand, within AO356_29365 at 6830.425 kb on - strand, within AO356_29365 at 6830.428 kb on + strand, within AO356_29365 at 6830.742 kb on + strand, within AO356_29365 at 6830.743 kb on - strand, within AO356_29365 at 6830.743 kb on - strand, within AO356_29365 at 6830.779 kb on - strand, within AO356_29365 at 6830.779 kb on - strand, within AO356_29365 at 6830.779 kb on - strand, within AO356_29365 at 6831.096 kb on + strand at 6831.096 kb on + strand at 6831.096 kb on + strand at 6831.096 kb on + strand at 6831.097 kb on - strand at 6831.097 kb on - strand at 6831.182 kb on + strand at 6831.224 kb on + strand at 6831.387 kb on - strand at 6831.387 kb on - strand at 6831.387 kb on - strand at 6831.435 kb on + strand at 6831.635 kb on + strand, within AO356_29370 at 6831.713 kb on + strand, within AO356_29370 at 6831.713 kb on + strand, within AO356_29370 at 6831.713 kb on + strand, within AO356_29370 at 6831.762 kb on - strand, within AO356_29370 at 6831.854 kb on + strand, within AO356_29370 at 6831.854 kb on + strand, within AO356_29370 at 6831.855 kb on - strand, within AO356_29370 at 6831.856 kb on + strand, within AO356_29370 at 6831.857 kb on - strand, within AO356_29370 at 6831.911 kb on + strand, within AO356_29370 at 6831.912 kb on - strand, within AO356_29370 at 6832.063 kb on + strand, within AO356_29370 at 6832.307 kb on + strand, within AO356_29370 at 6832.397 kb on + strand, within AO356_29370 at 6832.397 kb on + strand, within AO356_29370 at 6832.667 kb on + strand at 6832.724 kb on + strand at 6832.725 kb on - strand at 6832.725 kb on - strand at 6832.736 kb on + strand at 6832.736 kb on + strand at 6832.743 kb on - strand at 6832.743 kb on - strand at 6832.954 kb on - strand at 6832.954 kb on - strand at 6832.954 kb on - strand at 6832.955 kb on + strand at 6833.107 kb on + strand, within AO356_29375 at 6833.108 kb on - strand, within AO356_29375 at 6833.461 kb on + strand, within AO356_29375 at 6833.524 kb on + strand, within AO356_29375 at 6833.524 kb on + strand, within AO356_29375 at 6833.735 kb on + strand, within AO356_29375 at 6833.736 kb on - strand, within AO356_29375 at 6833.767 kb on + strand at 6833.768 kb on - strand at 6833.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 6,830,407 + AO356_29365 0.23 -0.9 6,830,407 + AO356_29365 0.23 +0.9 6,830,408 - AO356_29365 0.24 +0.0 6,830,408 - AO356_29365 0.24 +0.7 6,830,410 - AO356_29365 0.24 +1.8 6,830,424 + AO356_29365 0.25 -0.1 6,830,425 - AO356_29365 0.25 +0.0 6,830,428 + AO356_29365 0.26 -0.2 6,830,742 + AO356_29365 0.60 +0.7 6,830,743 - AO356_29365 0.60 -0.4 6,830,743 - AO356_29365 0.60 +0.3 6,830,779 - AO356_29365 0.64 +0.2 6,830,779 - AO356_29365 0.64 -0.5 6,830,779 - AO356_29365 0.64 +0.4 6,831,096 + -2.1 6,831,096 + +0.7 6,831,096 + -1.3 6,831,096 + -1.4 6,831,097 - -0.5 6,831,097 - -0.1 6,831,182 + +0.5 6,831,224 + +0.3 6,831,387 - +0.1 6,831,387 - +0.7 6,831,387 - -0.6 6,831,435 + +1.0 6,831,635 + AO356_29370 0.22 -0.4 6,831,713 + AO356_29370 0.28 -0.9 6,831,713 + AO356_29370 0.28 -0.8 6,831,713 + AO356_29370 0.28 -0.7 6,831,762 - AO356_29370 0.31 -0.5 6,831,854 + AO356_29370 0.37 -0.9 6,831,854 + AO356_29370 0.37 -0.1 6,831,855 - AO356_29370 0.37 +0.5 6,831,856 + AO356_29370 0.37 +0.0 6,831,857 - AO356_29370 0.37 -0.1 6,831,911 + AO356_29370 0.41 -0.5 6,831,912 - AO356_29370 0.41 -0.1 6,832,063 + AO356_29370 0.51 -0.5 6,832,307 + AO356_29370 0.67 -1.0 6,832,397 + AO356_29370 0.73 +0.6 6,832,397 + AO356_29370 0.73 +0.1 6,832,667 + -0.1 6,832,724 + +0.0 6,832,725 - -0.7 6,832,725 - -0.3 6,832,736 + -0.3 6,832,736 + +1.3 6,832,743 - -0.3 6,832,743 - +0.1 6,832,954 - +1.3 6,832,954 - -0.1 6,832,954 - -0.7 6,832,955 + +0.7 6,833,107 + AO356_29375 0.21 +0.5 6,833,108 - AO356_29375 0.21 -0.5 6,833,461 + AO356_29375 0.59 -0.7 6,833,524 + AO356_29375 0.66 +0.6 6,833,524 + AO356_29375 0.66 +1.4 6,833,735 + AO356_29375 0.89 +0.0 6,833,736 - AO356_29375 0.89 -0.4 6,833,767 + -1.0 6,833,768 - +0.6 6,833,768 - -1.1
Or see this region's nucleotide sequence