Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25810

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25805 and AO356_25810 are separated by 17 nucleotidesAO356_25810 and AO356_25815 are separated by 10 nucleotidesAO356_25815 and AO356_25820 are separated by 2 nucleotides AO356_25805: AO356_25805 - hypothetical protein, at 5,834,530 to 5,836,134 _25805 AO356_25810: AO356_25810 - biopolymer transporter ExbB, at 5,836,152 to 5,837,951 _25810 AO356_25815: AO356_25815 - biopolymer transporter ExbD, at 5,837,962 to 5,838,387 _25815 AO356_25820: AO356_25820 - energy transducer TonB, at 5,838,390 to 5,839,094 _25820 Position (kb) 5836 5837 5838Strain fitness (log2 ratio) -2 -1 0 1 2at 5835.179 kb on - strand, within AO356_25805at 5835.271 kb on + strand, within AO356_25805at 5835.272 kb on - strand, within AO356_25805at 5835.379 kb on + strand, within AO356_25805at 5835.397 kb on + strand, within AO356_25805at 5835.398 kb on - strand, within AO356_25805at 5835.398 kb on - strand, within AO356_25805at 5835.398 kb on - strand, within AO356_25805at 5835.511 kb on + strand, within AO356_25805at 5835.512 kb on - strand, within AO356_25805at 5835.512 kb on - strand, within AO356_25805at 5835.641 kb on - strand, within AO356_25805at 5835.695 kb on - strand, within AO356_25805at 5835.902 kb on - strand, within AO356_25805at 5835.902 kb on - strand, within AO356_25805at 5835.923 kb on - strand, within AO356_25805at 5835.923 kb on - strand, within AO356_25805at 5835.949 kb on + strand, within AO356_25805at 5835.949 kb on + strand, within AO356_25805at 5836.162 kb on + strandat 5836.162 kb on + strandat 5836.163 kb on - strandat 5836.163 kb on - strandat 5836.163 kb on - strandat 5836.168 kb on + strandat 5836.509 kb on + strand, within AO356_25810at 5836.510 kb on - strand, within AO356_25810at 5836.510 kb on - strand, within AO356_25810at 5836.569 kb on + strand, within AO356_25810at 5836.581 kb on + strand, within AO356_25810at 5836.582 kb on - strand, within AO356_25810at 5836.620 kb on - strand, within AO356_25810at 5836.664 kb on + strand, within AO356_25810at 5836.971 kb on + strand, within AO356_25810at 5837.457 kb on + strand, within AO356_25810at 5837.458 kb on - strand, within AO356_25810at 5837.458 kb on - strand, within AO356_25810at 5837.458 kb on - strand, within AO356_25810at 5837.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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5,835,179 - AO356_25805 0.40 +0.5
5,835,271 + AO356_25805 0.46 +0.5
5,835,272 - AO356_25805 0.46 +0.2
5,835,379 + AO356_25805 0.53 +0.1
5,835,397 + AO356_25805 0.54 -0.3
5,835,398 - AO356_25805 0.54 -0.0
5,835,398 - AO356_25805 0.54 +0.2
5,835,398 - AO356_25805 0.54 +0.3
5,835,511 + AO356_25805 0.61 +0.1
5,835,512 - AO356_25805 0.61 -1.3
5,835,512 - AO356_25805 0.61 -0.5
5,835,641 - AO356_25805 0.69 +0.8
5,835,695 - AO356_25805 0.73 +0.3
5,835,902 - AO356_25805 0.85 -0.8
5,835,902 - AO356_25805 0.85 +1.8
5,835,923 - AO356_25805 0.87 -0.2
5,835,923 - AO356_25805 0.87 +0.8
5,835,949 + AO356_25805 0.88 -0.0
5,835,949 + AO356_25805 0.88 -0.9
5,836,162 + -0.3
5,836,162 + -0.2
5,836,163 - -0.3
5,836,163 - +1.4
5,836,163 - +0.1
5,836,168 + -2.3
5,836,509 + AO356_25810 0.20 -1.1
5,836,510 - AO356_25810 0.20 +0.5
5,836,510 - AO356_25810 0.20 -0.7
5,836,569 + AO356_25810 0.23 +0.4
5,836,581 + AO356_25810 0.24 +1.2
5,836,582 - AO356_25810 0.24 +0.4
5,836,620 - AO356_25810 0.26 -1.8
5,836,664 + AO356_25810 0.28 -0.3
5,836,971 + AO356_25810 0.46 -0.8
5,837,457 + AO356_25810 0.72 -1.1
5,837,458 - AO356_25810 0.73 -1.0
5,837,458 - AO356_25810 0.73 -0.4
5,837,458 - AO356_25810 0.73 +0.3
5,837,973 - +0.2

Or see this region's nucleotide sequence