Experiment: Ferric citrate electron acceptor; flight; DNA cleaned with chelator
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0508 and SO0508.1 are separated by 302 nucleotides SO0508.1 and SO0510 overlap by 54 nucleotides SO0510 and accB are separated by 18 nucleotides
SO0508: SO0508 - hypothetical protein (NCBI ptt file), at 534,068 to 534,856
SO0508
SO0508.1: SO0508.1 - hypothetical Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI ptt file), at 535,159 to 535,374
SO0508.1
SO0510: SO0510 - oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file), at 535,321 to 535,998
SO0510
SO0511: accB - acetyl-CoA carboxylase, biotin carboxyl carrier protein (NCBI ptt file), at 536,017 to 536,475
accB
Position (kb) 535
536 Strain fitness (log2 ratio) -2
-1
0
1 at 534.197 kb on - strand, within SO0508 at 534.393 kb on + strand, within SO0508 at 534.401 kb on - strand, within SO0508 at 534.537 kb on - strand, within SO0508 at 534.570 kb on - strand, within SO0508 at 534.606 kb on + strand, within SO0508 at 534.644 kb on - strand, within SO0508 at 534.678 kb on - strand, within SO0508 at 534.731 kb on + strand, within SO0508 at 534.759 kb on - strand, within SO0508 at 535.202 kb on - strand, within SO0508.1 at 535.249 kb on + strand, within SO0508.1 at 535.264 kb on - strand, within SO0508.1 at 535.294 kb on - strand, within SO0508.1 at 535.349 kb on + strand at 535.354 kb on + strand at 535.362 kb on - strand at 535.362 kb on - strand at 535.388 kb on - strand at 535.520 kb on - strand, within SO0510 at 535.545 kb on - strand, within SO0510 at 535.562 kb on + strand, within SO0510 at 535.566 kb on + strand, within SO0510 at 535.606 kb on - strand, within SO0510 at 535.700 kb on + strand, within SO0510 at 535.708 kb on - strand, within SO0510 at 535.708 kb on - strand, within SO0510 at 535.710 kb on + strand, within SO0510 at 535.741 kb on - strand, within SO0510 at 535.752 kb on - strand, within SO0510 at 535.759 kb on + strand, within SO0510 at 535.875 kb on - strand, within SO0510 at 535.880 kb on - strand, within SO0510 at 535.883 kb on + strand, within SO0510 at 535.913 kb on + strand, within SO0510 at 535.918 kb on + strand, within SO0510 at 535.923 kb on + strand, within SO0510 at 535.926 kb on - strand, within SO0510 at 535.926 kb on - strand, within SO0510 at 535.928 kb on + strand, within SO0510 at 535.936 kb on - strand at 535.939 kb on + strand at 535.963 kb on + strand at 535.963 kb on + strand at 535.971 kb on - strand at 535.971 kb on - strand at 536.044 kb on + strand at 536.057 kb on - strand at 536.170 kb on - strand, within accB at 536.235 kb on + strand, within accB at 536.243 kb on - strand, within accB at 536.245 kb on + strand, within accB at 536.307 kb on + strand, within accB at 536.307 kb on + strand, within accB at 536.309 kb on + strand, within accB at 536.309 kb on + strand, within accB at 536.309 kb on + strand, within accB at 536.317 kb on - strand, within accB at 536.319 kb on + strand, within accB at 536.319 kb on + strand, within accB at 536.319 kb on + strand, within accB at 536.319 kb on + strand, within accB at 536.327 kb on - strand, within accB at 536.327 kb on - strand, within accB at 536.346 kb on - strand, within accB
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight; DNA cleaned with chelator remove 534,197 - SO0508 0.16 -0.6 534,393 + SO0508 0.41 -0.2 534,401 - SO0508 0.42 -0.3 534,537 - SO0508 0.59 +0.1 534,570 - SO0508 0.64 -1.0 534,606 + SO0508 0.68 +0.1 534,644 - SO0508 0.73 -0.9 534,678 - SO0508 0.77 -0.6 534,731 + SO0508 0.84 -0.4 534,759 - SO0508 0.88 +0.9 535,202 - SO0508.1 0.20 -1.6 535,249 + SO0508.1 0.42 -1.2 535,264 - SO0508.1 0.49 +0.3 535,294 - SO0508.1 0.62 -0.9 535,349 + -0.3 535,354 + -0.9 535,362 - -2.3 535,362 - -1.2 535,388 - +0.6 535,520 - SO0510 0.29 -0.7 535,545 - SO0510 0.33 -0.2 535,562 + SO0510 0.36 -0.5 535,566 + SO0510 0.36 +1.3 535,606 - SO0510 0.42 -0.8 535,700 + SO0510 0.56 +0.9 535,708 - SO0510 0.57 -0.8 535,708 - SO0510 0.57 -0.2 535,710 + SO0510 0.57 -0.8 535,741 - SO0510 0.62 +0.0 535,752 - SO0510 0.64 -0.1 535,759 + SO0510 0.65 -2.6 535,875 - SO0510 0.82 -0.2 535,880 - SO0510 0.82 -0.1 535,883 + SO0510 0.83 -0.3 535,913 + SO0510 0.87 -1.5 535,918 + SO0510 0.88 -0.8 535,923 + SO0510 0.89 +0.2 535,926 - SO0510 0.89 -1.0 535,926 - SO0510 0.89 -0.3 535,928 + SO0510 0.90 -0.3 535,936 - -0.2 535,939 + -0.7 535,963 + +0.2 535,963 + +0.5 535,971 - +0.2 535,971 - -0.3 536,044 + +0.9 536,057 - -0.7 536,170 - accB SO0511 0.33 -2.1 536,235 + accB SO0511 0.47 -0.7 536,243 - accB SO0511 0.49 -0.5 536,245 + accB SO0511 0.50 -0.6 536,307 + accB SO0511 0.63 +0.2 536,307 + accB SO0511 0.63 -0.5 536,309 + accB SO0511 0.64 -0.3 536,309 + accB SO0511 0.64 +0.4 536,309 + accB SO0511 0.64 +0.4 536,317 - accB SO0511 0.65 +0.6 536,319 + accB SO0511 0.66 +0.4 536,319 + accB SO0511 0.66 +1.1 536,319 + accB SO0511 0.66 +0.2 536,319 + accB SO0511 0.66 +0.3 536,327 - accB SO0511 0.68 -0.2 536,327 - accB SO0511 0.68 -0.1 536,346 - accB SO0511 0.72 +0.2
Or see this region's nucleotide sequence