Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25960 and AO356_25965 are separated by 41 nucleotides AO356_25965 and AO356_25970 are separated by 133 nucleotides AO356_25970 and AO356_25975 are separated by 15 nucleotides
AO356_25960: AO356_25960 - hypothetical protein, at 5,867,951 to 5,869,300
_25960
AO356_25965: AO356_25965 - AsnC family transcriptional regulator, at 5,869,342 to 5,869,779
_25965
AO356_25970: AO356_25970 - multidrug DMT transporter permease, at 5,869,913 to 5,870,806
_25970
AO356_25975: AO356_25975 - aldehyde dehydrogenase, at 5,870,822 to 5,872,447
_25975
Position (kb)
5869
5870
5871 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5869.112 kb on + strand, within AO356_25960 at 5869.149 kb on - strand, within AO356_25960 at 5869.178 kb on + strand at 5869.179 kb on - strand at 5869.298 kb on + strand at 5869.882 kb on + strand at 5869.882 kb on + strand at 5869.883 kb on - strand at 5869.883 kb on - strand at 5870.166 kb on + strand, within AO356_25970 at 5870.166 kb on + strand, within AO356_25970 at 5870.166 kb on + strand, within AO356_25970 at 5870.166 kb on + strand, within AO356_25970 at 5870.167 kb on - strand, within AO356_25970 at 5870.167 kb on - strand, within AO356_25970 at 5870.177 kb on + strand, within AO356_25970 at 5870.177 kb on + strand, within AO356_25970 at 5870.178 kb on - strand, within AO356_25970 at 5870.178 kb on - strand, within AO356_25970 at 5870.213 kb on + strand, within AO356_25970 at 5870.214 kb on - strand, within AO356_25970 at 5870.214 kb on - strand, within AO356_25970 at 5870.214 kb on - strand, within AO356_25970 at 5870.238 kb on + strand, within AO356_25970 at 5870.238 kb on + strand, within AO356_25970 at 5870.591 kb on + strand, within AO356_25970 at 5870.591 kb on + strand, within AO356_25970 at 5870.591 kb on + strand, within AO356_25970 at 5870.592 kb on - strand, within AO356_25970 at 5870.592 kb on - strand, within AO356_25970 at 5870.804 kb on + strand at 5870.832 kb on + strand at 5870.832 kb on + strand at 5870.832 kb on + strand at 5870.832 kb on + strand at 5870.832 kb on + strand at 5870.833 kb on - strand at 5870.833 kb on - strand at 5871.138 kb on - strand, within AO356_25975 at 5871.141 kb on + strand, within AO356_25975 at 5871.211 kb on - strand, within AO356_25975 at 5871.252 kb on + strand, within AO356_25975 at 5871.253 kb on - strand, within AO356_25975 at 5871.253 kb on - strand, within AO356_25975 at 5871.340 kb on - strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 5,869,112 + AO356_25960 0.86 -0.1 5,869,149 - AO356_25960 0.89 -0.2 5,869,178 + +1.4 5,869,179 - +0.3 5,869,298 + +1.6 5,869,882 + +0.1 5,869,882 + -0.5 5,869,883 - +1.4 5,869,883 - -0.4 5,870,166 + AO356_25970 0.28 +0.2 5,870,166 + AO356_25970 0.28 -0.4 5,870,166 + AO356_25970 0.28 -0.5 5,870,166 + AO356_25970 0.28 -0.3 5,870,167 - AO356_25970 0.28 -2.2 5,870,167 - AO356_25970 0.28 +0.3 5,870,177 + AO356_25970 0.30 -1.2 5,870,177 + AO356_25970 0.30 +0.0 5,870,178 - AO356_25970 0.30 -0.5 5,870,178 - AO356_25970 0.30 -0.4 5,870,213 + AO356_25970 0.34 +0.0 5,870,214 - AO356_25970 0.34 +1.5 5,870,214 - AO356_25970 0.34 +0.3 5,870,214 - AO356_25970 0.34 +1.3 5,870,238 + AO356_25970 0.36 -0.3 5,870,238 + AO356_25970 0.36 -0.2 5,870,591 + AO356_25970 0.76 +0.2 5,870,591 + AO356_25970 0.76 -0.2 5,870,591 + AO356_25970 0.76 +0.8 5,870,592 - AO356_25970 0.76 -0.3 5,870,592 - AO356_25970 0.76 +0.1 5,870,804 + -0.8 5,870,832 + +2.2 5,870,832 + +2.1 5,870,832 + +0.4 5,870,832 + +0.7 5,870,832 + +0.2 5,870,833 - +0.1 5,870,833 - +0.4 5,871,138 - AO356_25975 0.19 -0.4 5,871,141 + AO356_25975 0.20 +0.9 5,871,211 - AO356_25975 0.24 +0.4 5,871,252 + AO356_25975 0.26 +0.9 5,871,253 - AO356_25975 0.27 -0.0 5,871,253 - AO356_25975 0.27 -0.5 5,871,340 - AO356_25975 0.32 +0.6 5,871,729 + AO356_25975 0.56 -0.2 5,871,729 + AO356_25975 0.56 -1.5 5,871,729 + AO356_25975 0.56 +0.1 5,871,730 - AO356_25975 0.56 -1.2 5,871,730 - AO356_25975 0.56 +0.0 5,871,730 - AO356_25975 0.56 -2.2
Or see this region's nucleotide sequence