Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09300

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09295 and AO356_09300 are separated by 203 nucleotidesAO356_09300 and AO356_09305 overlap by 1 nucleotides AO356_09295: AO356_09295 - hypothetical protein, at 2,103,077 to 2,104,354 _09295 AO356_09300: AO356_09300 - type II secretory protein PulM, at 2,104,558 to 2,105,013 _09300 AO356_09305: AO356_09305 - type II secretory protein pull, at 2,105,013 to 2,106,116 _09305 Position (kb) 2104 2105 2106Strain fitness (log2 ratio) -2 -1 0 1at 2103.574 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.575 kb on + strand, within AO356_09295at 2103.576 kb on - strand, within AO356_09295at 2103.576 kb on - strand, within AO356_09295at 2103.576 kb on - strand, within AO356_09295at 2103.576 kb on - strand, within AO356_09295at 2103.576 kb on - strand, within AO356_09295at 2103.576 kb on - strand, within AO356_09295at 2103.577 kb on + strand, within AO356_09295at 2103.578 kb on - strand, within AO356_09295at 2103.860 kb on + strand, within AO356_09295at 2103.860 kb on + strand, within AO356_09295at 2103.860 kb on + strand, within AO356_09295at 2103.861 kb on - strand, within AO356_09295at 2103.861 kb on - strand, within AO356_09295at 2103.890 kb on + strand, within AO356_09295at 2103.891 kb on - strand, within AO356_09295at 2103.932 kb on + strand, within AO356_09295at 2103.933 kb on - strand, within AO356_09295at 2103.933 kb on - strand, within AO356_09295at 2103.933 kb on - strand, within AO356_09295at 2103.933 kb on - strand, within AO356_09295at 2103.947 kb on + strand, within AO356_09295at 2103.947 kb on + strand, within AO356_09295at 2103.947 kb on + strand, within AO356_09295at 2103.947 kb on + strand, within AO356_09295at 2103.947 kb on + strand, within AO356_09295at 2103.947 kb on + strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2103.948 kb on - strand, within AO356_09295at 2104.178 kb on + strand, within AO356_09295at 2104.178 kb on + strand, within AO356_09295at 2104.179 kb on - strand, within AO356_09295at 2104.179 kb on - strand, within AO356_09295at 2104.190 kb on + strand, within AO356_09295at 2104.191 kb on - strand, within AO356_09295at 2104.194 kb on - strand, within AO356_09295at 2104.194 kb on - strand, within AO356_09295at 2104.352 kb on + strandat 2104.352 kb on + strandat 2104.352 kb on + strandat 2104.461 kb on - strandat 2104.461 kb on - strandat 2104.905 kb on - strand, within AO356_09300at 2105.362 kb on + strand, within AO356_09305at 2105.394 kb on + strand, within AO356_09305at 2105.394 kb on + strand, within AO356_09305at 2105.394 kb on + strand, within AO356_09305at 2105.395 kb on - strand, within AO356_09305at 2105.395 kb on - strand, within AO356_09305

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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2,103,574 + AO356_09295 0.39 +0.2
2,103,575 + AO356_09295 0.39 -1.0
2,103,575 + AO356_09295 0.39 -0.2
2,103,575 + AO356_09295 0.39 +0.2
2,103,575 + AO356_09295 0.39 -0.3
2,103,575 + AO356_09295 0.39 +0.4
2,103,575 + AO356_09295 0.39 +0.5
2,103,575 + AO356_09295 0.39 +0.7
2,103,575 + AO356_09295 0.39 -1.2
2,103,576 - AO356_09295 0.39 -0.1
2,103,576 - AO356_09295 0.39 -1.3
2,103,576 - AO356_09295 0.39 +0.0
2,103,576 - AO356_09295 0.39 -0.1
2,103,576 - AO356_09295 0.39 +0.6
2,103,576 - AO356_09295 0.39 +0.6
2,103,577 + AO356_09295 0.39 +1.2
2,103,578 - AO356_09295 0.39 +1.0
2,103,860 + AO356_09295 0.61 -0.7
2,103,860 + AO356_09295 0.61 -1.4
2,103,860 + AO356_09295 0.61 -0.3
2,103,861 - AO356_09295 0.61 -0.3
2,103,861 - AO356_09295 0.61 +0.1
2,103,890 + AO356_09295 0.64 +0.2
2,103,891 - AO356_09295 0.64 +0.7
2,103,932 + AO356_09295 0.67 +0.6
2,103,933 - AO356_09295 0.67 -0.4
2,103,933 - AO356_09295 0.67 +0.4
2,103,933 - AO356_09295 0.67 -0.4
2,103,933 - AO356_09295 0.67 -0.3
2,103,947 + AO356_09295 0.68 +1.6
2,103,947 + AO356_09295 0.68 +0.1
2,103,947 + AO356_09295 0.68 -0.4
2,103,947 + AO356_09295 0.68 +0.7
2,103,947 + AO356_09295 0.68 +0.3
2,103,947 + AO356_09295 0.68 +0.1
2,103,948 - AO356_09295 0.68 -0.1
2,103,948 - AO356_09295 0.68 +0.7
2,103,948 - AO356_09295 0.68 +0.7
2,103,948 - AO356_09295 0.68 -0.9
2,103,948 - AO356_09295 0.68 +0.6
2,103,948 - AO356_09295 0.68 +0.3
2,103,948 - AO356_09295 0.68 +1.0
2,103,948 - AO356_09295 0.68 +0.1
2,104,178 + AO356_09295 0.86 -0.1
2,104,178 + AO356_09295 0.86 +0.6
2,104,179 - AO356_09295 0.86 -1.0
2,104,179 - AO356_09295 0.86 -0.1
2,104,190 + AO356_09295 0.87 -1.5
2,104,191 - AO356_09295 0.87 +0.5
2,104,194 - AO356_09295 0.87 -0.2
2,104,194 - AO356_09295 0.87 -0.1
2,104,352 + +1.0
2,104,352 + +0.6
2,104,352 + -1.8
2,104,461 - +0.4
2,104,461 - -0.7
2,104,905 - AO356_09300 0.76 -1.3
2,105,362 + AO356_09305 0.32 +0.4
2,105,394 + AO356_09305 0.35 -0.4
2,105,394 + AO356_09305 0.35 +0.3
2,105,394 + AO356_09305 0.35 -2.0
2,105,395 - AO356_09305 0.35 +1.2
2,105,395 - AO356_09305 0.35 +0.3

Or see this region's nucleotide sequence