Strain Fitness in Shewanella oneidensis MR-1 around SO0733

Experiment: hydrous ferric oxide electron acceptor; flight

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0731 and SO0732 are separated by 237 nucleotidesSO0732 and SO0733 are separated by 312 nucleotidesSO0733 and SO0734 are separated by 305 nucleotidesSO0734 and SO0735 are separated by 1 nucleotides SO0731: SO0731 - ISSod3, transposase (NCBI ptt file), at 746,230 to 747,444 SO0731 SO0732: SO0732 - conserved hypothetical protein (NCBI ptt file), at 747,682 to 747,924 SO0732 SO0733: SO0733 - cold shock domain family protein (NCBI ptt file), at 748,237 to 748,848 SO0733 SO0734: SO0734 - conserved hypothetical protein (NCBI ptt file), at 749,154 to 749,510 SO0734 SO0735: SO0735 - hypothetical protein (NCBI ptt file), at 749,512 to 750,462 SO0735 Position (kb) 748 749Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 747.568 kb on + strandat 747.578 kb on + strandat 747.580 kb on + strandat 747.624 kb on + strandat 747.624 kb on + strandat 747.632 kb on - strandat 747.632 kb on - strandat 747.640 kb on - strandat 747.802 kb on + strand, within SO0732at 747.914 kb on + strandat 747.949 kb on + strandat 747.969 kb on + strandat 747.999 kb on + strandat 747.999 kb on + strandat 748.027 kb on - strandat 748.027 kb on - strandat 748.164 kb on + strandat 748.167 kb on - strandat 748.167 kb on - strandat 748.245 kb on + strandat 748.374 kb on - strand, within SO0733at 748.405 kb on + strand, within SO0733at 748.408 kb on + strand, within SO0733at 748.491 kb on - strand, within SO0733at 748.545 kb on - strand, within SO0733at 748.579 kb on + strand, within SO0733at 748.634 kb on - strand, within SO0733at 748.638 kb on + strand, within SO0733at 748.646 kb on - strand, within SO0733at 748.822 kb on + strandat 748.832 kb on + strandat 748.832 kb on + strandat 748.924 kb on + strandat 748.933 kb on - strandat 748.965 kb on - strandat 748.986 kb on - strandat 748.997 kb on + strandat 749.140 kb on - strandat 749.161 kb on + strandat 749.169 kb on - strandat 749.169 kb on - strandat 749.169 kb on - strandat 749.202 kb on + strand, within SO0734at 749.210 kb on - strand, within SO0734at 749.219 kb on + strand, within SO0734at 749.235 kb on - strand, within SO0734at 749.241 kb on + strand, within SO0734at 749.273 kb on - strand, within SO0734at 749.363 kb on + strand, within SO0734at 749.371 kb on + strand, within SO0734at 749.647 kb on - strand, within SO0735at 749.786 kb on + strand, within SO0735at 749.810 kb on + strand, within SO0735at 749.828 kb on - strand, within SO0735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor; flight
remove
747,568 + +0.8
747,578 + -1.8
747,580 + -2.5
747,624 + +2.0
747,624 + -2.9
747,632 - -3.2
747,632 - +0.5
747,640 - +2.4
747,802 + SO0732 0.49 -2.3
747,914 + -0.1
747,949 + +0.0
747,969 + -3.7
747,999 + +0.6
747,999 + -1.4
748,027 - -1.1
748,027 - -0.5
748,164 + -1.8
748,167 - +0.3
748,167 - +2.1
748,245 + +0.9
748,374 - SO0733 0.22 -0.6
748,405 + SO0733 0.27 -0.9
748,408 + SO0733 0.28 -1.4
748,491 - SO0733 0.42 +0.5
748,545 - SO0733 0.50 -1.5
748,579 + SO0733 0.56 -2.1
748,634 - SO0733 0.65 -0.8
748,638 + SO0733 0.66 -1.2
748,646 - SO0733 0.67 +0.1
748,822 + +2.8
748,832 + -1.3
748,832 + +0.3
748,924 + +2.1
748,933 - -2.3
748,965 - -2.3
748,986 - +1.2
748,997 + +1.1
749,140 - +0.1
749,161 + -2.5
749,169 - -0.9
749,169 - +0.2
749,169 - +2.8
749,202 + SO0734 0.13 +1.3
749,210 - SO0734 0.16 -4.5
749,219 + SO0734 0.18 +0.6
749,235 - SO0734 0.23 +2.6
749,241 + SO0734 0.24 -0.8
749,273 - SO0734 0.33 +1.6
749,363 + SO0734 0.59 +0.3
749,371 + SO0734 0.61 +0.8
749,647 - SO0735 0.14 -3.0
749,786 + SO0735 0.29 +0.7
749,810 + SO0735 0.31 -3.4
749,828 - SO0735 0.33 -0.5

Or see this region's nucleotide sequence