Strain Fitness in Shewanella oneidensis MR-1 around SO0299

Experiment: hydrous ferric oxide electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0297 and gmhA overlap by 4 nucleotidesgmhA and SO0299 are separated by 106 nucleotidesSO0299 and SO0300 overlap by 4 nucleotides SO0297: SO0297 - lipoprotein, putative (NCBI ptt file), at 303,044 to 303,610 SO0297 SO0298: gmhA - phosphoheptose isomerase (NCBI ptt file), at 303,607 to 304,200 gmhA SO0299: SO0299 - conserved hypothetical protein TIGR00252 (NCBI ptt file), at 304,307 to 304,633 SO0299 SO0300: SO0300 - lipoprotein, putative (NCBI ptt file), at 304,630 to 306,489 SO0300 Position (kb) 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 303.313 kb on + strand, within SO0297at 303.339 kb on + strand, within SO0297at 303.360 kb on - strand, within SO0297at 303.550 kb on - strand, within SO0297at 303.566 kb on - strandat 303.600 kb on + strandat 303.799 kb on + strand, within gmhAat 303.809 kb on + strand, within gmhAat 304.090 kb on + strand, within gmhAat 304.571 kb on + strand, within SO0299at 304.579 kb on - strand, within SO0299at 304.593 kb on - strand, within SO0299at 304.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor; flight
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303,313 + SO0297 0.47 -2.3
303,339 + SO0297 0.52 +0.3
303,360 - SO0297 0.56 +0.6
303,550 - SO0297 0.89 +2.3
303,566 - -2.6
303,600 + -0.5
303,799 + gmhA SO0298 0.32 +1.3
303,809 + gmhA SO0298 0.34 +0.1
304,090 + gmhA SO0298 0.81 -3.6
304,571 + SO0299 0.81 -1.2
304,579 - SO0299 0.83 -0.6
304,593 - SO0299 0.87 -2.5
304,627 + -0.9

Or see this region's nucleotide sequence