Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006046

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_006044 and ABIE53_006045 overlap by 1 nucleotidesABIE53_006045 and ABIE53_006046 overlap by 16 nucleotidesABIE53_006046 and ABIE53_006047 overlap by 4 nucleotides ABIE53_006044: ABIE53_006044 - type III secretion protein J, at 2,368,869 to 2,369,717 _006044 ABIE53_006045: ABIE53_006045 - type III secretion system HrpB4-like protein, at 2,369,717 to 2,370,673 _006045 ABIE53_006046: ABIE53_006046 - type III secretion protein L, at 2,370,658 to 2,371,521 _006046 ABIE53_006047: ABIE53_006047 - type III secretion protein N (ATPase), at 2,371,518 to 2,372,912 _006047 Position (kb) 2370 2371 2372Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2370.375 kb on + strand, within ABIE53_006045at 2370.375 kb on + strand, within ABIE53_006045at 2370.376 kb on - strand, within ABIE53_006045at 2370.376 kb on - strand, within ABIE53_006045at 2370.441 kb on - strand, within ABIE53_006045at 2370.537 kb on + strand, within ABIE53_006045at 2370.561 kb on + strand, within ABIE53_006045at 2370.922 kb on + strand, within ABIE53_006046at 2370.923 kb on - strand, within ABIE53_006046at 2371.186 kb on + strand, within ABIE53_006046at 2371.429 kb on + strand, within ABIE53_006046at 2371.777 kb on + strand, within ABIE53_006047

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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2,370,375 + ABIE53_006045 0.69 +0.4
2,370,375 + ABIE53_006045 0.69 +0.2
2,370,376 - ABIE53_006045 0.69 +2.1
2,370,376 - ABIE53_006045 0.69 -1.0
2,370,441 - ABIE53_006045 0.76 -0.5
2,370,537 + ABIE53_006045 0.86 +2.8
2,370,561 + ABIE53_006045 0.88 -0.6
2,370,922 + ABIE53_006046 0.31 -2.2
2,370,923 - ABIE53_006046 0.31 -2.2
2,371,186 + ABIE53_006046 0.61 -1.2
2,371,429 + ABIE53_006046 0.89 -2.2
2,371,777 + ABIE53_006047 0.19 +1.1

Or see this region's nucleotide sequence