Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004288

Experiment: Plant outgrowth control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_004287 and ABIE53_004288 are separated by 108 nucleotidesABIE53_004288 and ABIE53_004289 are separated by 164 nucleotides ABIE53_004287: ABIE53_004287 - polyphosphate kinase 2, at 462,461 to 463,387 _004287 ABIE53_004288: ABIE53_004288 - catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme, at 463,496 to 463,936 _004288 ABIE53_004289: ABIE53_004289 - gamma-glutamyltranspeptidase/glutathione hydrolase, at 464,101 to 465,834 _004289 Position (kb) 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 462.511 kb on - strandat 462.511 kb on - strandat 462.523 kb on - strandat 462.658 kb on + strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.659 kb on - strand, within ABIE53_004287at 462.695 kb on - strand, within ABIE53_004287at 462.695 kb on - strand, within ABIE53_004287at 462.695 kb on - strand, within ABIE53_004287at 462.696 kb on + strand, within ABIE53_004287at 462.696 kb on + strand, within ABIE53_004287at 462.696 kb on + strand, within ABIE53_004287at 462.697 kb on - strand, within ABIE53_004287at 462.817 kb on - strand, within ABIE53_004287at 462.889 kb on - strand, within ABIE53_004287at 462.939 kb on + strand, within ABIE53_004287at 462.939 kb on + strand, within ABIE53_004287at 462.939 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.993 kb on + strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 462.994 kb on - strand, within ABIE53_004287at 463.005 kb on + strand, within ABIE53_004287at 463.006 kb on - strand, within ABIE53_004287at 463.215 kb on + strand, within ABIE53_004287at 463.215 kb on + strand, within ABIE53_004287at 463.215 kb on + strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.216 kb on - strand, within ABIE53_004287at 463.580 kb on - strand, within ABIE53_004288at 463.656 kb on + strand, within ABIE53_004288at 463.656 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.680 kb on + strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.681 kb on - strand, within ABIE53_004288at 463.740 kb on + strand, within ABIE53_004288at 463.741 kb on - strand, within ABIE53_004288at 463.741 kb on - strand, within ABIE53_004288at 463.741 kb on - strand, within ABIE53_004288at 463.765 kb on + strand, within ABIE53_004288at 463.815 kb on + strand, within ABIE53_004288at 463.816 kb on - strand, within ABIE53_004288at 463.816 kb on - strand, within ABIE53_004288at 464.046 kb on + strandat 464.047 kb on - strandat 464.102 kb on + strandat 464.102 kb on + strandat 464.214 kb on + strandat 464.214 kb on + strandat 464.214 kb on + strandat 464.215 kb on - strandat 464.215 kb on - strandat 464.262 kb on + strandat 464.262 kb on + strandat 464.262 kb on + strandat 464.262 kb on + strandat 464.263 kb on - strandat 464.263 kb on - strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.264 kb on + strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.265 kb on - strandat 464.344 kb on - strand, within ABIE53_004289at 464.354 kb on + strand, within ABIE53_004289at 464.612 kb on + strand, within ABIE53_004289at 464.612 kb on + strand, within ABIE53_004289at 464.612 kb on + strand, within ABIE53_004289at 464.613 kb on - strand, within ABIE53_004289at 464.613 kb on - strand, within ABIE53_004289at 464.613 kb on - strand, within ABIE53_004289at 464.627 kb on + strand, within ABIE53_004289at 464.627 kb on + strand, within ABIE53_004289at 464.628 kb on - strand, within ABIE53_004289at 464.628 kb on - strand, within ABIE53_004289at 464.628 kb on - strand, within ABIE53_004289at 464.628 kb on - strand, within ABIE53_004289at 464.749 kb on - strand, within ABIE53_004289at 464.777 kb on + strand, within ABIE53_004289at 464.778 kb on - strand, within ABIE53_004289at 464.813 kb on + strand, within ABIE53_004289at 464.813 kb on + strand, within ABIE53_004289at 464.835 kb on - strand, within ABIE53_004289at 464.835 kb on - strand, within ABIE53_004289at 464.888 kb on + strand, within ABIE53_004289at 464.888 kb on + strand, within ABIE53_004289at 464.888 kb on + strand, within ABIE53_004289at 464.889 kb on - strand, within ABIE53_004289at 464.889 kb on - strand, within ABIE53_004289at 464.889 kb on - strand, within ABIE53_004289

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
remove
462,511 - +0.7
462,511 - +1.5
462,523 - -0.3
462,658 + ABIE53_004287 0.21 -0.7
462,659 - ABIE53_004287 0.21 -0.7
462,659 - ABIE53_004287 0.21 -1.4
462,659 - ABIE53_004287 0.21 -0.5
462,659 - ABIE53_004287 0.21 -1.7
462,659 - ABIE53_004287 0.21 +2.5
462,659 - ABIE53_004287 0.21 -0.3
462,695 - ABIE53_004287 0.25 -0.8
462,695 - ABIE53_004287 0.25 -1.9
462,695 - ABIE53_004287 0.25 -0.2
462,696 + ABIE53_004287 0.25 -2.1
462,696 + ABIE53_004287 0.25 -0.3
462,696 + ABIE53_004287 0.25 -0.9
462,697 - ABIE53_004287 0.25 +0.7
462,817 - ABIE53_004287 0.38 -3.6
462,889 - ABIE53_004287 0.46 -2.4
462,939 + ABIE53_004287 0.52 +2.2
462,939 + ABIE53_004287 0.52 -0.6
462,939 + ABIE53_004287 0.52 -0.3
462,993 + ABIE53_004287 0.57 +0.5
462,993 + ABIE53_004287 0.57 +0.2
462,993 + ABIE53_004287 0.57 +2.5
462,993 + ABIE53_004287 0.57 -2.2
462,994 - ABIE53_004287 0.57 -0.1
462,994 - ABIE53_004287 0.57 -0.1
462,994 - ABIE53_004287 0.57 +0.2
462,994 - ABIE53_004287 0.57 -0.1
463,005 + ABIE53_004287 0.59 -1.0
463,006 - ABIE53_004287 0.59 +0.7
463,215 + ABIE53_004287 0.81 -2.5
463,215 + ABIE53_004287 0.81 -0.0
463,215 + ABIE53_004287 0.81 -2.7
463,216 - ABIE53_004287 0.81 +2.5
463,216 - ABIE53_004287 0.81 +1.8
463,216 - ABIE53_004287 0.81 -0.1
463,216 - ABIE53_004287 0.81 +0.1
463,580 - ABIE53_004288 0.19 -1.1
463,656 + ABIE53_004288 0.36 -2.3
463,656 + ABIE53_004288 0.36 -1.7
463,680 + ABIE53_004288 0.42 +0.5
463,680 + ABIE53_004288 0.42 -2.4
463,680 + ABIE53_004288 0.42 -0.1
463,680 + ABIE53_004288 0.42 +1.7
463,681 - ABIE53_004288 0.42 -2.3
463,681 - ABIE53_004288 0.42 -1.4
463,681 - ABIE53_004288 0.42 +2.4
463,681 - ABIE53_004288 0.42 -0.1
463,681 - ABIE53_004288 0.42 -0.8
463,740 + ABIE53_004288 0.55 -2.0
463,741 - ABIE53_004288 0.56 -1.4
463,741 - ABIE53_004288 0.56 +3.1
463,741 - ABIE53_004288 0.56 -2.5
463,765 + ABIE53_004288 0.61 +2.5
463,815 + ABIE53_004288 0.72 -0.3
463,816 - ABIE53_004288 0.73 -1.0
463,816 - ABIE53_004288 0.73 -0.1
464,046 + -2.7
464,047 - +1.1
464,102 + +1.5
464,102 + -0.3
464,214 + -0.6
464,214 + +2.5
464,214 + -0.3
464,215 - +0.6
464,215 - +1.6
464,262 + -1.8
464,262 + -0.7
464,262 + -1.4
464,262 + -2.6
464,263 - -0.0
464,263 - +0.8
464,264 + -0.5
464,264 + -0.7
464,264 + -0.1
464,264 + -2.4
464,264 + -0.1
464,264 + -2.5
464,265 - +0.7
464,265 - +1.6
464,265 - +0.3
464,265 - -1.9
464,265 - -0.8
464,344 - ABIE53_004289 0.14 +0.5
464,354 + ABIE53_004289 0.15 -0.3
464,612 + ABIE53_004289 0.29 -3.4
464,612 + ABIE53_004289 0.29 +1.3
464,612 + ABIE53_004289 0.29 -3.4
464,613 - ABIE53_004289 0.30 +2.5
464,613 - ABIE53_004289 0.30 +2.5
464,613 - ABIE53_004289 0.30 -1.2
464,627 + ABIE53_004289 0.30 -3.3
464,627 + ABIE53_004289 0.30 -1.3
464,628 - ABIE53_004289 0.30 +0.4
464,628 - ABIE53_004289 0.30 -0.3
464,628 - ABIE53_004289 0.30 -2.4
464,628 - ABIE53_004289 0.30 +0.4
464,749 - ABIE53_004289 0.37 -3.3
464,777 + ABIE53_004289 0.39 +0.5
464,778 - ABIE53_004289 0.39 +0.6
464,813 + ABIE53_004289 0.41 -0.4
464,813 + ABIE53_004289 0.41 -1.4
464,835 - ABIE53_004289 0.42 +0.1
464,835 - ABIE53_004289 0.42 -1.1
464,888 + ABIE53_004289 0.45 +0.7
464,888 + ABIE53_004289 0.45 +0.9
464,888 + ABIE53_004289 0.45 +2.0
464,889 - ABIE53_004289 0.45 +0.6
464,889 - ABIE53_004289 0.45 +0.9
464,889 - ABIE53_004289 0.45 -0.7

Or see this region's nucleotide sequence