Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22925 and AO356_22930 are separated by 5 nucleotides AO356_22930 and AO356_22935 are separated by 251 nucleotides AO356_22935 and AO356_22940 are separated by 4 nucleotides AO356_22940 and AO356_22945 overlap by 1 nucleotides
AO356_22925: AO356_22925 - histidine kinase, at 5,119,196 to 5,121,274
_22925
AO356_22930: AO356_22930 - DNA alkylation repair protein, at 5,121,280 to 5,122,383
_22930
AO356_22935: AO356_22935 - hypothetical protein, at 5,122,635 to 5,122,943
_22935
AO356_22940: AO356_22940 - hypothetical protein, at 5,122,948 to 5,123,271
_22940
AO356_22945: AO356_22945 - peptidase M4, at 5,123,271 to 5,124,332
_22945
Position (kb) 5121
5122
5123 Strain fitness (log2 ratio) -1
0
1
2 at 5120.420 kb on + strand, within AO356_22925 at 5120.420 kb on + strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.553 kb on - strand, within AO356_22925 at 5120.739 kb on - strand, within AO356_22925 at 5120.739 kb on - strand, within AO356_22925 at 5120.753 kb on - strand, within AO356_22925 at 5120.842 kb on + strand, within AO356_22925 at 5120.842 kb on + strand, within AO356_22925 at 5120.843 kb on - strand, within AO356_22925 at 5120.843 kb on - strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5121.197 kb on + strand at 5121.197 kb on + strand at 5121.384 kb on + strand at 5121.384 kb on + strand at 5121.384 kb on + strand at 5121.385 kb on - strand at 5121.385 kb on - strand at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5122.040 kb on + strand, within AO356_22930 at 5122.041 kb on - strand, within AO356_22930 at 5122.083 kb on - strand, within AO356_22930 at 5122.094 kb on + strand, within AO356_22930 at 5122.173 kb on - strand, within AO356_22930 at 5122.413 kb on + strand at 5122.413 kb on + strand at 5122.413 kb on + strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.416 kb on - strand at 5122.572 kb on - strand at 5122.635 kb on - strand at 5122.635 kb on - strand at 5122.792 kb on - strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.885 kb on - strand, within AO356_22935 at 5122.941 kb on + strand at 5122.942 kb on - strand at 5122.942 kb on - strand at 5122.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 5,120,420 + AO356_22925 0.59 +1.1 5,120,420 + AO356_22925 0.59 +0.4 5,120,421 - AO356_22925 0.59 +0.8 5,120,421 - AO356_22925 0.59 +1.2 5,120,421 - AO356_22925 0.59 -0.8 5,120,421 - AO356_22925 0.59 +0.4 5,120,553 - AO356_22925 0.65 +1.1 5,120,739 - AO356_22925 0.74 -0.7 5,120,739 - AO356_22925 0.74 -0.5 5,120,753 - AO356_22925 0.75 +1.0 5,120,842 + AO356_22925 0.79 +1.4 5,120,842 + AO356_22925 0.79 +0.4 5,120,843 - AO356_22925 0.79 +0.9 5,120,843 - AO356_22925 0.79 -0.1 5,120,993 + AO356_22925 0.86 +0.1 5,120,993 + AO356_22925 0.86 -0.1 5,120,993 + AO356_22925 0.86 -0.4 5,121,197 + +1.7 5,121,197 + -0.0 5,121,384 + +0.7 5,121,384 + +0.7 5,121,384 + -0.3 5,121,385 - +0.0 5,121,385 - +0.2 5,121,673 - AO356_22930 0.36 -0.2 5,121,673 - AO356_22930 0.36 +1.4 5,121,673 - AO356_22930 0.36 +1.1 5,121,803 + AO356_22930 0.47 +0.9 5,121,803 + AO356_22930 0.47 +1.4 5,121,803 + AO356_22930 0.47 +0.4 5,121,803 + AO356_22930 0.47 +0.4 5,121,804 - AO356_22930 0.47 +0.3 5,121,804 - AO356_22930 0.47 -0.6 5,122,040 + AO356_22930 0.69 -0.7 5,122,041 - AO356_22930 0.69 +0.5 5,122,083 - AO356_22930 0.73 +0.7 5,122,094 + AO356_22930 0.74 +0.7 5,122,173 - AO356_22930 0.81 +0.1 5,122,413 + -0.3 5,122,413 + +1.0 5,122,413 + +0.1 5,122,414 - -0.5 5,122,414 - -0.5 5,122,414 - +1.2 5,122,414 - +0.4 5,122,414 - +0.4 5,122,414 - -0.5 5,122,414 - +0.1 5,122,414 - +0.3 5,122,414 - +0.1 5,122,414 - -0.5 5,122,416 - +0.1 5,122,572 - -0.1 5,122,635 - -0.0 5,122,635 - -0.5 5,122,792 - AO356_22935 0.51 +2.4 5,122,884 + AO356_22935 0.81 +0.4 5,122,884 + AO356_22935 0.81 +0.7 5,122,884 + AO356_22935 0.81 -0.6 5,122,885 - AO356_22935 0.81 +0.8 5,122,941 + -0.5 5,122,942 - -0.5 5,122,942 - -0.3 5,122,942 - -0.1
Or see this region's nucleotide sequence