Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18275

Experiment: Carbon source D-Mannitol 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18270 and AO356_18275 overlap by 4 nucleotidesAO356_18275 and AO356_18280 are separated by 404 nucleotidesAO356_18280 and AO356_18285 are separated by 131 nucleotides AO356_18270: AO356_18270 - iron ABC transporter ATP-binding protein, at 4,117,701 to 4,118,810 _18270 AO356_18275: AO356_18275 - ornithine carbamoyltransferase, at 4,118,807 to 4,119,727 _18275 AO356_18280: AO356_18280 - hypothetical protein, at 4,120,132 to 4,120,419 _18280 AO356_18285: AO356_18285 - dehydrogenase, at 4,120,551 to 4,122,659 _18285 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4117.879 kb on - strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.892 kb on - strand, within AO356_18270at 4117.892 kb on - strand, within AO356_18270at 4117.938 kb on - strand, within AO356_18270at 4117.938 kb on - strand, within AO356_18270at 4117.958 kb on - strand, within AO356_18270at 4117.958 kb on - strand, within AO356_18270at 4118.014 kb on + strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.090 kb on - strand, within AO356_18270at 4118.090 kb on - strand, within AO356_18270at 4118.137 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.539 kb on + strand, within AO356_18270at 4118.540 kb on - strand, within AO356_18270at 4118.540 kb on - strand, within AO356_18270at 4118.820 kb on + strandat 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.226 kb on + strand, within AO356_18275at 4119.226 kb on + strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.415 kb on + strand, within AO356_18275at 4119.416 kb on - strand, within AO356_18275at 4119.623 kb on + strand, within AO356_18275at 4119.624 kb on - strand, within AO356_18275at 4119.624 kb on - strand, within AO356_18275at 4119.624 kb on - strand, within AO356_18275at 4119.635 kb on - strand, within AO356_18275at 4119.745 kb on + strandat 4119.746 kb on - strandat 4119.776 kb on - strandat 4119.827 kb on + strandat 4119.851 kb on + strandat 4119.851 kb on + strandat 4119.851 kb on + strandat 4119.851 kb on + strandat 4119.851 kb on + strandat 4119.851 kb on + strandat 4119.852 kb on - strandat 4119.852 kb on - strandat 4119.852 kb on - strandat 4119.925 kb on + strandat 4119.925 kb on + strandat 4119.925 kb on + strandat 4119.925 kb on + strandat 4119.925 kb on + strandat 4119.925 kb on + strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.926 kb on - strandat 4119.964 kb on - strandat 4119.964 kb on - strandat 4119.964 kb on - strandat 4120.026 kb on + strandat 4120.026 kb on + strandat 4120.027 kb on - strandat 4120.027 kb on - strandat 4120.081 kb on + strandat 4120.082 kb on - strandat 4120.099 kb on + strandat 4120.101 kb on + strandat 4120.101 kb on + strandat 4120.101 kb on + strandat 4120.101 kb on + strandat 4120.101 kb on + strandat 4120.101 kb on + strandat 4120.102 kb on - strandat 4120.102 kb on - strandat 4120.102 kb on - strandat 4120.102 kb on - strandat 4120.102 kb on - strandat 4120.102 kb on - strandat 4120.497 kb on + strandat 4120.497 kb on + strandat 4120.497 kb on + strandat 4120.498 kb on - strandat 4120.498 kb on - strandat 4120.498 kb on - strandat 4120.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM
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4,117,879 - AO356_18270 0.16 -0.2
4,117,891 + AO356_18270 0.17 +0.7
4,117,891 + AO356_18270 0.17 +0.5
4,117,891 + AO356_18270 0.17 -0.6
4,117,892 - AO356_18270 0.17 +1.2
4,117,892 - AO356_18270 0.17 -0.9
4,117,938 - AO356_18270 0.21 -0.0
4,117,938 - AO356_18270 0.21 +0.4
4,117,958 - AO356_18270 0.23 +0.8
4,117,958 - AO356_18270 0.23 +0.7
4,118,014 + AO356_18270 0.28 +1.3
4,118,015 - AO356_18270 0.28 -0.4
4,118,015 - AO356_18270 0.28 -0.5
4,118,015 - AO356_18270 0.28 -0.2
4,118,089 + AO356_18270 0.35 +1.1
4,118,089 + AO356_18270 0.35 +0.2
4,118,089 + AO356_18270 0.35 +0.7
4,118,089 + AO356_18270 0.35 -0.1
4,118,089 + AO356_18270 0.35 +0.2
4,118,090 - AO356_18270 0.35 +0.1
4,118,090 - AO356_18270 0.35 +0.7
4,118,137 + AO356_18270 0.39 -0.4
4,118,146 + AO356_18270 0.40 +0.3
4,118,146 + AO356_18270 0.40 -1.1
4,118,146 + AO356_18270 0.40 -0.4
4,118,146 + AO356_18270 0.40 +0.5
4,118,146 + AO356_18270 0.40 +0.3
4,118,147 - AO356_18270 0.40 -0.1
4,118,147 - AO356_18270 0.40 -0.3
4,118,147 - AO356_18270 0.40 +0.6
4,118,147 - AO356_18270 0.40 +0.0
4,118,147 - AO356_18270 0.40 +0.2
4,118,147 - AO356_18270 0.40 -2.5
4,118,539 + AO356_18270 0.75 +0.6
4,118,540 - AO356_18270 0.76 -0.1
4,118,540 - AO356_18270 0.76 +1.2
4,118,820 + -0.5
4,119,224 + AO356_18275 0.45 -3.6
4,119,224 + AO356_18275 0.45 -1.7
4,119,224 + AO356_18275 0.45 -2.0
4,119,224 + AO356_18275 0.45 -3.0
4,119,224 + AO356_18275 0.45 -2.4
4,119,224 + AO356_18275 0.45 -2.2
4,119,224 + AO356_18275 0.45 -2.1
4,119,224 + AO356_18275 0.45 -4.4
4,119,224 + AO356_18275 0.45 -3.5
4,119,224 + AO356_18275 0.45 -2.6
4,119,225 - AO356_18275 0.45 -2.3
4,119,225 - AO356_18275 0.45 -1.4
4,119,225 - AO356_18275 0.45 -3.7
4,119,225 - AO356_18275 0.45 -1.5
4,119,225 - AO356_18275 0.45 -2.6
4,119,225 - AO356_18275 0.45 -1.4
4,119,225 - AO356_18275 0.45 -1.7
4,119,225 - AO356_18275 0.45 -2.1
4,119,225 - AO356_18275 0.45 -2.0
4,119,226 + AO356_18275 0.45 -2.6
4,119,226 + AO356_18275 0.45 -1.5
4,119,227 - AO356_18275 0.46 -1.9
4,119,227 - AO356_18275 0.46 -4.1
4,119,227 - AO356_18275 0.46 -2.5
4,119,227 - AO356_18275 0.46 -1.6
4,119,227 - AO356_18275 0.46 -1.7
4,119,227 - AO356_18275 0.46 -1.0
4,119,228 + AO356_18275 0.46 -2.7
4,119,228 + AO356_18275 0.46 -3.4
4,119,228 + AO356_18275 0.46 -3.6
4,119,228 + AO356_18275 0.46 -1.7
4,119,228 + AO356_18275 0.46 -2.4
4,119,228 + AO356_18275 0.46 -3.6
4,119,228 + AO356_18275 0.46 -3.9
4,119,228 + AO356_18275 0.46 -2.0
4,119,229 - AO356_18275 0.46 -3.7
4,119,229 - AO356_18275 0.46 -2.4
4,119,229 - AO356_18275 0.46 -3.0
4,119,229 - AO356_18275 0.46 -3.1
4,119,229 - AO356_18275 0.46 -3.1
4,119,229 - AO356_18275 0.46 -2.2
4,119,229 - AO356_18275 0.46 -1.9
4,119,229 - AO356_18275 0.46 -2.6
4,119,229 - AO356_18275 0.46 -3.3
4,119,229 - AO356_18275 0.46 -1.9
4,119,415 + AO356_18275 0.66 +0.2
4,119,416 - AO356_18275 0.66 -2.5
4,119,623 + AO356_18275 0.89 -2.5
4,119,624 - AO356_18275 0.89 -4.1
4,119,624 - AO356_18275 0.89 -1.2
4,119,624 - AO356_18275 0.89 -4.2
4,119,635 - AO356_18275 0.90 -2.3
4,119,745 + -1.8
4,119,746 - -0.2
4,119,776 - -0.8
4,119,827 + -2.8
4,119,851 + -3.7
4,119,851 + -1.4
4,119,851 + -1.2
4,119,851 + -1.9
4,119,851 + -2.3
4,119,851 + -3.2
4,119,852 - +0.6
4,119,852 - +0.5
4,119,852 - -0.5
4,119,925 + +1.1
4,119,925 + -0.3
4,119,925 + -0.2
4,119,925 + +0.0
4,119,925 + -0.3
4,119,925 + +0.1
4,119,926 - -1.4
4,119,926 - -0.2
4,119,926 - +0.3
4,119,926 - +0.2
4,119,926 - +0.4
4,119,926 - -0.1
4,119,926 - +0.6
4,119,926 - +0.3
4,119,926 - +0.6
4,119,926 - +0.6
4,119,964 - -0.2
4,119,964 - +0.1
4,119,964 - +1.2
4,120,026 + -0.7
4,120,026 + +0.9
4,120,027 - -0.2
4,120,027 - +0.2
4,120,081 + +0.5
4,120,082 - +0.1
4,120,099 + +1.4
4,120,101 + +0.5
4,120,101 + -0.0
4,120,101 + +0.5
4,120,101 + -0.5
4,120,101 + -0.3
4,120,101 + -2.1
4,120,102 - -0.5
4,120,102 - +0.5
4,120,102 - +1.3
4,120,102 - +0.6
4,120,102 - +1.5
4,120,102 - -0.4
4,120,497 + +0.4
4,120,497 + +0.3
4,120,497 + -0.5
4,120,498 - +0.1
4,120,498 - +0.3
4,120,498 - +1.2
4,120,534 + +0.6

Or see this region's nucleotide sequence