Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23800

Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23795 and BWI76_RS23800 are separated by 9 nucleotidesBWI76_RS23800 and BWI76_RS23805 are separated by 155 nucleotides BWI76_RS23795: BWI76_RS23795 - lysine--tRNA ligase, at 4,966,586 to 4,968,103 _RS23795 BWI76_RS23800: BWI76_RS23800 - peptide chain release factor 2, at 4,968,113 to 4,969,141 _RS23800 BWI76_RS23805: BWI76_RS23805 - ssDNA exonuclease RecJ, at 4,969,297 to 4,971,030 _RS23805 Position (kb) 4968 4969 4970Strain fitness (log2 ratio) -1 0 1 2at 4969.293 kb on + strandat 4969.563 kb on + strand, within BWI76_RS23805at 4969.772 kb on + strand, within BWI76_RS23805at 4969.831 kb on + strand, within BWI76_RS23805at 4969.846 kb on - strand, within BWI76_RS23805at 4970.012 kb on - strand, within BWI76_RS23805at 4970.039 kb on - strand, within BWI76_RS23805at 4970.088 kb on - strand, within BWI76_RS23805

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
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4,969,293 + -0.7
4,969,563 + BWI76_RS23805 0.15 +0.0
4,969,772 + BWI76_RS23805 0.27 -0.4
4,969,831 + BWI76_RS23805 0.31 -0.9
4,969,846 - BWI76_RS23805 0.32 +1.9
4,970,012 - BWI76_RS23805 0.41 -0.5
4,970,039 - BWI76_RS23805 0.43 -0.2
4,970,088 - BWI76_RS23805 0.46 -0.3

Or see this region's nucleotide sequence