Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04695 and BWI76_RS04700 are separated by 2 nucleotides BWI76_RS04700 and BWI76_RS04705 are separated by 180 nucleotides
BWI76_RS04695: BWI76_RS04695 - acetolactate synthase 3 large subunit, at 979,896 to 981,620
_RS04695
BWI76_RS04700: BWI76_RS04700 - acetolactate synthase small subunit, at 981,623 to 982,114
_RS04700
BWI76_RS04705: BWI76_RS04705 - DNA-binding transcriptional regulator FruR, at 982,295 to 983,299
_RS04705
Position (kb) 981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 980.693 kb on + strand at 980.695 kb on + strand, within BWI76_RS04695 at 980.773 kb on + strand, within BWI76_RS04695 at 980.801 kb on - strand, within BWI76_RS04695 at 980.887 kb on + strand at 980.981 kb on - strand, within BWI76_RS04695 at 981.034 kb on - strand, within BWI76_RS04695 at 981.087 kb on + strand, within BWI76_RS04695 at 981.107 kb on + strand, within BWI76_RS04695 at 981.115 kb on - strand, within BWI76_RS04695 at 981.115 kb on - strand, within BWI76_RS04695 at 981.115 kb on - strand, within BWI76_RS04695 at 981.274 kb on - strand, within BWI76_RS04695 at 981.303 kb on + strand, within BWI76_RS04695 at 981.351 kb on + strand, within BWI76_RS04695 at 981.364 kb on - strand, within BWI76_RS04695 at 981.388 kb on - strand, within BWI76_RS04695 at 981.388 kb on - strand, within BWI76_RS04695 at 981.542 kb on - strand at 981.551 kb on + strand at 981.551 kb on + strand at 981.551 kb on + strand at 981.559 kb on - strand at 981.593 kb on - strand at 981.617 kb on - strand at 981.665 kb on + strand at 981.801 kb on + strand, within BWI76_RS04700 at 981.884 kb on - strand, within BWI76_RS04700 at 982.063 kb on + strand, within BWI76_RS04700 at 982.068 kb on + strand at 982.222 kb on + strand at 982.222 kb on + strand at 982.340 kb on + strand at 982.631 kb on + strand, within BWI76_RS04705 at 982.647 kb on - strand, within BWI76_RS04705 at 982.684 kb on - strand, within BWI76_RS04705 at 982.730 kb on + strand, within BWI76_RS04705 at 982.730 kb on + strand, within BWI76_RS04705 at 982.757 kb on + strand, within BWI76_RS04705 at 982.789 kb on - strand, within BWI76_RS04705 at 983.020 kb on + strand, within BWI76_RS04705 at 983.028 kb on - strand, within BWI76_RS04705 at 983.066 kb on - strand, within BWI76_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 980,693 + -0.7 980,695 + BWI76_RS04695 0.46 +2.6 980,773 + BWI76_RS04695 0.51 +0.1 980,801 - BWI76_RS04695 0.52 +0.6 980,887 + -0.4 980,981 - BWI76_RS04695 0.63 -1.0 981,034 - BWI76_RS04695 0.66 -0.1 981,087 + BWI76_RS04695 0.69 +0.9 981,107 + BWI76_RS04695 0.70 -1.5 981,115 - BWI76_RS04695 0.71 -0.7 981,115 - BWI76_RS04695 0.71 +2.0 981,115 - BWI76_RS04695 0.71 +0.3 981,274 - BWI76_RS04695 0.80 +0.8 981,303 + BWI76_RS04695 0.82 -0.1 981,351 + BWI76_RS04695 0.84 +0.1 981,364 - BWI76_RS04695 0.85 -2.1 981,388 - BWI76_RS04695 0.86 -0.5 981,388 - BWI76_RS04695 0.86 -2.7 981,542 - +0.1 981,551 + +0.1 981,551 + +0.6 981,551 + +0.2 981,559 - -0.2 981,593 - +2.4 981,617 - -1.1 981,665 + -0.1 981,801 + BWI76_RS04700 0.36 +2.2 981,884 - BWI76_RS04700 0.53 +1.6 982,063 + BWI76_RS04700 0.89 +0.4 982,068 + -0.0 982,222 + -0.4 982,222 + +0.8 982,340 + +0.9 982,631 + BWI76_RS04705 0.33 -1.7 982,647 - BWI76_RS04705 0.35 +1.0 982,684 - BWI76_RS04705 0.39 -0.1 982,730 + BWI76_RS04705 0.43 -0.2 982,730 + BWI76_RS04705 0.43 -0.1 982,757 + BWI76_RS04705 0.46 +3.5 982,789 - BWI76_RS04705 0.49 -1.1 983,020 + BWI76_RS04705 0.72 +1.0 983,028 - BWI76_RS04705 0.73 -2.6 983,066 - BWI76_RS04705 0.77 +0.9
Or see this region's nucleotide sequence