Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00855 and BWI76_RS00860 are separated by 31 nucleotides BWI76_RS00860 and BWI76_RS00865 overlap by 1 nucleotides BWI76_RS00865 and BWI76_RS00870 overlap by 18 nucleotides
BWI76_RS00855: BWI76_RS00855 - argininosuccinate lyase, at 176,786 to 178,159
_RS00855
BWI76_RS00860: BWI76_RS00860 - hypothetical protein, at 178,191 to 178,430
_RS00860
BWI76_RS00865: BWI76_RS00865 - DNA-binding transcriptional regulator OxyR, at 178,430 to 179,347
_RS00865
BWI76_RS00870: BWI76_RS00870 - NAD(P)(+) transhydrogenase, at 179,330 to 180,730
_RS00870
Position (kb) 178
179 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 177.231 kb on + strand, within BWI76_RS00855 at 177.375 kb on + strand, within BWI76_RS00855 at 177.458 kb on + strand, within BWI76_RS00855 at 177.466 kb on - strand, within BWI76_RS00855 at 177.598 kb on + strand, within BWI76_RS00855 at 177.712 kb on + strand, within BWI76_RS00855 at 177.719 kb on - strand, within BWI76_RS00855 at 177.744 kb on - strand, within BWI76_RS00855 at 178.145 kb on - strand at 178.161 kb on - strand at 178.161 kb on - strand at 178.175 kb on + strand at 178.551 kb on - strand, within BWI76_RS00865 at 178.618 kb on - strand, within BWI76_RS00865 at 178.761 kb on - strand, within BWI76_RS00865 at 178.943 kb on + strand, within BWI76_RS00865 at 179.153 kb on + strand, within BWI76_RS00865 at 179.208 kb on - strand, within BWI76_RS00865 at 179.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 177,231 + BWI76_RS00855 0.32 -3.1 177,375 + BWI76_RS00855 0.43 -5.3 177,458 + BWI76_RS00855 0.49 -1.3 177,466 - BWI76_RS00855 0.49 -3.4 177,598 + BWI76_RS00855 0.59 -6.0 177,712 + BWI76_RS00855 0.67 +1.0 177,719 - BWI76_RS00855 0.68 -1.8 177,744 - BWI76_RS00855 0.70 -4.9 178,145 - -0.4 178,161 - +2.3 178,161 - +1.8 178,175 + +0.2 178,551 - BWI76_RS00865 0.13 +2.0 178,618 - BWI76_RS00865 0.20 +1.0 178,761 - BWI76_RS00865 0.36 +1.0 178,943 + BWI76_RS00865 0.56 -2.5 179,153 + BWI76_RS00865 0.79 +0.8 179,208 - BWI76_RS00865 0.85 -0.2 179,279 - -1.7
Or see this region's nucleotide sequence