Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27665

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27660 and AO356_27665 are separated by 70 nucleotidesAO356_27665 and AO356_27670 are separated by 345 nucleotides AO356_27660: AO356_27660 - glycosyltransferase, at 6,314,448 to 6,315,731 _27660 AO356_27665: AO356_27665 - AraC family transcriptional regulator, at 6,315,802 to 6,316,707 _27665 AO356_27670: AO356_27670 - sugar ABC transporter substrate-binding protein, at 6,317,053 to 6,318,363 _27670 Position (kb) 6315 6316 6317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6315.210 kb on + strand, within AO356_27660at 6315.219 kb on + strand, within AO356_27660at 6315.220 kb on - strand, within AO356_27660at 6315.222 kb on - strand, within AO356_27660at 6315.498 kb on + strand, within AO356_27660at 6315.498 kb on + strand, within AO356_27660at 6315.498 kb on + strand, within AO356_27660at 6315.499 kb on - strand, within AO356_27660at 6315.499 kb on - strand, within AO356_27660at 6315.499 kb on - strand, within AO356_27660at 6315.499 kb on - strand, within AO356_27660at 6315.500 kb on + strand, within AO356_27660at 6315.690 kb on + strandat 6315.690 kb on + strandat 6315.690 kb on + strandat 6315.690 kb on + strandat 6315.690 kb on + strandat 6315.690 kb on + strandat 6315.690 kb on + strandat 6315.691 kb on - strandat 6315.691 kb on - strandat 6315.835 kb on + strandat 6315.835 kb on + strandat 6315.835 kb on + strandat 6315.929 kb on - strand, within AO356_27665at 6315.980 kb on - strand, within AO356_27665at 6315.980 kb on - strand, within AO356_27665at 6315.980 kb on - strand, within AO356_27665at 6315.980 kb on - strand, within AO356_27665at 6315.995 kb on - strand, within AO356_27665at 6315.995 kb on - strand, within AO356_27665at 6316.312 kb on + strand, within AO356_27665at 6316.313 kb on - strand, within AO356_27665at 6316.463 kb on - strand, within AO356_27665at 6316.463 kb on - strand, within AO356_27665at 6316.892 kb on + strandat 6316.921 kb on - strandat 6316.921 kb on - strandat 6317.009 kb on + strandat 6317.009 kb on + strandat 6317.010 kb on - strandat 6317.010 kb on - strandat 6317.010 kb on - strandat 6317.103 kb on + strandat 6317.314 kb on + strand, within AO356_27670at 6317.437 kb on + strand, within AO356_27670at 6317.438 kb on - strand, within AO356_27670at 6317.438 kb on - strand, within AO356_27670at 6317.473 kb on + strand, within AO356_27670at 6317.474 kb on - strand, within AO356_27670at 6317.474 kb on - strand, within AO356_27670at 6317.584 kb on + strand, within AO356_27670

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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6,315,210 + AO356_27660 0.59 -0.4
6,315,219 + AO356_27660 0.60 -0.0
6,315,220 - AO356_27660 0.60 +0.6
6,315,222 - AO356_27660 0.60 +1.6
6,315,498 + AO356_27660 0.82 +0.2
6,315,498 + AO356_27660 0.82 +0.2
6,315,498 + AO356_27660 0.82 -0.6
6,315,499 - AO356_27660 0.82 +0.5
6,315,499 - AO356_27660 0.82 +1.2
6,315,499 - AO356_27660 0.82 -0.2
6,315,499 - AO356_27660 0.82 +0.8
6,315,500 + AO356_27660 0.82 +1.0
6,315,690 + +0.6
6,315,690 + +0.7
6,315,690 + +0.4
6,315,690 + -0.9
6,315,690 + +1.0
6,315,690 + +1.2
6,315,690 + +0.6
6,315,691 - -1.8
6,315,691 - -0.3
6,315,835 + -2.5
6,315,835 + -4.1
6,315,835 + -1.7
6,315,929 - AO356_27665 0.14 -2.0
6,315,980 - AO356_27665 0.20 -2.6
6,315,980 - AO356_27665 0.20 -3.2
6,315,980 - AO356_27665 0.20 -2.3
6,315,980 - AO356_27665 0.20 -3.5
6,315,995 - AO356_27665 0.21 -0.9
6,315,995 - AO356_27665 0.21 -2.9
6,316,312 + AO356_27665 0.56 -2.3
6,316,313 - AO356_27665 0.56 -3.3
6,316,463 - AO356_27665 0.73 -3.3
6,316,463 - AO356_27665 0.73 -1.3
6,316,892 + +0.2
6,316,921 - -1.3
6,316,921 - -2.3
6,317,009 + -2.0
6,317,009 + -2.5
6,317,010 - -1.7
6,317,010 - -2.0
6,317,010 - -2.0
6,317,103 + -3.2
6,317,314 + AO356_27670 0.20 -1.6
6,317,437 + AO356_27670 0.29 -2.7
6,317,438 - AO356_27670 0.29 -2.5
6,317,438 - AO356_27670 0.29 -2.0
6,317,473 + AO356_27670 0.32 -2.4
6,317,474 - AO356_27670 0.32 -2.7
6,317,474 - AO356_27670 0.32 -3.1
6,317,584 + AO356_27670 0.41 -0.8

Or see this region's nucleotide sequence