Experiment: Carbon source D-Mannitol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27080 and AO356_27085 are separated by 257 nucleotides AO356_27085 and AO356_27090 are separated by 343 nucleotides
AO356_27080: AO356_27080 - alcohol dehydrogenase, at 6,174,983 to 6,176,008
_27080
AO356_27085: AO356_27085 - LysR family transcriptional regulator, at 6,176,266 to 6,177,180
_27085
AO356_27090: AO356_27090 - amino acid transporter, at 6,177,524 to 6,178,159
_27090
Position (kb)
6176
6177
6178 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6176.034 kb on - strand at 6176.062 kb on - strand at 6176.085 kb on - strand at 6176.085 kb on - strand at 6176.088 kb on - strand at 6176.088 kb on - strand at 6176.146 kb on + strand at 6176.165 kb on + strand at 6176.166 kb on - strand at 6176.166 kb on - strand at 6176.274 kb on + strand at 6176.274 kb on + strand at 6176.275 kb on - strand at 6176.677 kb on + strand, within AO356_27085 at 6176.677 kb on + strand, within AO356_27085 at 6176.677 kb on + strand, within AO356_27085 at 6176.677 kb on + strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.731 kb on + strand, within AO356_27085 at 6176.731 kb on + strand, within AO356_27085 at 6176.732 kb on - strand, within AO356_27085 at 6176.920 kb on - strand, within AO356_27085 at 6177.007 kb on + strand, within AO356_27085 at 6177.008 kb on - strand, within AO356_27085 at 6177.008 kb on - strand, within AO356_27085 at 6177.178 kb on + strand at 6177.178 kb on + strand at 6177.178 kb on + strand at 6177.179 kb on - strand at 6177.189 kb on + strand at 6177.190 kb on - strand at 6177.209 kb on + strand at 6177.209 kb on + strand at 6177.209 kb on + strand at 6177.209 kb on + strand at 6177.209 kb on + strand at 6177.210 kb on - strand at 6177.210 kb on - strand at 6177.210 kb on - strand at 6177.210 kb on - strand at 6177.210 kb on - strand at 6177.255 kb on - strand at 6177.271 kb on - strand at 6177.313 kb on + strand at 6177.313 kb on + strand at 6177.313 kb on + strand at 6177.314 kb on - strand at 6177.342 kb on + strand at 6177.342 kb on + strand at 6177.343 kb on - strand at 6177.426 kb on + strand at 6177.485 kb on + strand at 6177.485 kb on + strand at 6177.485 kb on + strand at 6177.485 kb on + strand at 6177.485 kb on + strand at 6177.485 kb on + strand at 6177.485 kb on + strand at 6177.486 kb on - strand at 6177.486 kb on - strand at 6177.491 kb on - strand at 6177.546 kb on + strand at 6177.546 kb on + strand at 6177.546 kb on + strand at 6177.547 kb on - strand at 6177.547 kb on - strand at 6177.556 kb on - strand at 6177.566 kb on + strand at 6177.566 kb on + strand at 6177.566 kb on + strand at 6177.566 kb on + strand at 6177.566 kb on + strand at 6177.566 kb on + strand at 6177.566 kb on + strand at 6177.567 kb on - strand at 6177.567 kb on - strand at 6177.711 kb on + strand, within AO356_27090 at 6177.712 kb on - strand, within AO356_27090 at 6177.750 kb on + strand, within AO356_27090 at 6177.760 kb on - strand, within AO356_27090 at 6177.760 kb on - strand, within AO356_27090 at 6177.773 kb on + strand, within AO356_27090 at 6177.895 kb on + strand, within AO356_27090 at 6177.895 kb on + strand, within AO356_27090 at 6177.895 kb on + strand, within AO356_27090 at 6177.905 kb on - strand, within AO356_27090 at 6177.905 kb on - strand, within AO356_27090 at 6177.984 kb on + strand, within AO356_27090 at 6177.985 kb on - strand, within AO356_27090 at 6178.034 kb on + strand, within AO356_27090 at 6178.035 kb on - strand, within AO356_27090 at 6178.114 kb on - strand at 6178.116 kb on + strand at 6178.117 kb on - strand at 6178.162 kb on + strand at 6178.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM remove 6,176,034 - -0.0 6,176,062 - -0.4 6,176,085 - -0.3 6,176,085 - +0.3 6,176,088 - +0.9 6,176,088 - -0.9 6,176,146 + +1.1 6,176,165 + +3.0 6,176,166 - +0.2 6,176,166 - +2.4 6,176,274 + -1.2 6,176,274 + -0.4 6,176,275 - -0.0 6,176,677 + AO356_27085 0.45 -1.8 6,176,677 + AO356_27085 0.45 -0.0 6,176,677 + AO356_27085 0.45 -1.1 6,176,677 + AO356_27085 0.45 +0.5 6,176,678 - AO356_27085 0.45 -3.3 6,176,678 - AO356_27085 0.45 +0.5 6,176,678 - AO356_27085 0.45 +0.4 6,176,678 - AO356_27085 0.45 +0.5 6,176,678 - AO356_27085 0.45 +0.7 6,176,731 + AO356_27085 0.51 +0.0 6,176,731 + AO356_27085 0.51 +0.6 6,176,732 - AO356_27085 0.51 +0.2 6,176,920 - AO356_27085 0.71 -0.0 6,177,007 + AO356_27085 0.81 -1.6 6,177,008 - AO356_27085 0.81 -1.8 6,177,008 - AO356_27085 0.81 +1.3 6,177,178 + -0.3 6,177,178 + -0.6 6,177,178 + +0.4 6,177,179 - +0.3 6,177,189 + +0.3 6,177,190 - +1.0 6,177,209 + +0.4 6,177,209 + -0.5 6,177,209 + -0.4 6,177,209 + +0.6 6,177,209 + +0.4 6,177,210 - -0.1 6,177,210 - +0.8 6,177,210 - +0.5 6,177,210 - +0.6 6,177,210 - +1.2 6,177,255 - +0.1 6,177,271 - +0.7 6,177,313 + +0.2 6,177,313 + -0.4 6,177,313 + +0.1 6,177,314 - +0.7 6,177,342 + -1.1 6,177,342 + +1.3 6,177,343 - +0.7 6,177,426 + +0.4 6,177,485 + +0.3 6,177,485 + +1.4 6,177,485 + -0.3 6,177,485 + +0.5 6,177,485 + +0.7 6,177,485 + +0.0 6,177,485 + +1.0 6,177,486 - -0.6 6,177,486 - +1.0 6,177,491 - +2.0 6,177,546 + -0.0 6,177,546 + -0.8 6,177,546 + +1.4 6,177,547 - -0.6 6,177,547 - +0.9 6,177,556 - -0.0 6,177,566 + +1.2 6,177,566 + +0.8 6,177,566 + +2.0 6,177,566 + +0.6 6,177,566 + +1.0 6,177,566 + +0.8 6,177,566 + -0.1 6,177,567 - -0.2 6,177,567 - -0.1 6,177,711 + AO356_27090 0.29 +0.5 6,177,712 - AO356_27090 0.30 +0.7 6,177,750 + AO356_27090 0.36 -0.6 6,177,760 - AO356_27090 0.37 +0.0 6,177,760 - AO356_27090 0.37 -0.0 6,177,773 + AO356_27090 0.39 -0.2 6,177,895 + AO356_27090 0.58 +0.1 6,177,895 + AO356_27090 0.58 -0.5 6,177,895 + AO356_27090 0.58 +0.4 6,177,905 - AO356_27090 0.60 -1.3 6,177,905 - AO356_27090 0.60 -0.3 6,177,984 + AO356_27090 0.72 -0.6 6,177,985 - AO356_27090 0.72 +0.7 6,178,034 + AO356_27090 0.80 -0.2 6,178,035 - AO356_27090 0.80 -0.6 6,178,114 - -0.7 6,178,116 + -0.3 6,178,117 - -0.4 6,178,162 + +0.2 6,178,163 - -0.5
Or see this region's nucleotide sequence