Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0413

Experiment: MoLS4 with Formamide 10mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0411 and DVU0412 are separated by 16 nucleotidesDVU0412 and trk1 are separated by 57 nucleotidestrk1 and tme are separated by 118 nucleotides DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671 DVU0411 DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353 DVU0412 DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748 trk1 DVU0414: tme - NADP-dependent malic enzyme-related protein (TIGR), at 463,867 to 465,186 tme Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1 2at 461.480 kb on - strand, within DVU0411at 461.504 kb on + strandat 461.512 kb on - strandat 461.521 kb on + strandat 461.539 kb on - strandat 461.634 kb on + strandat 461.816 kb on + strand, within DVU0412at 461.824 kb on - strand, within DVU0412at 461.903 kb on + strand, within DVU0412at 461.965 kb on - strand, within DVU0412at 462.012 kb on - strand, within DVU0412at 462.046 kb on + strand, within DVU0412at 462.046 kb on + strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.181 kb on - strand, within DVU0412at 462.239 kb on + strand, within DVU0412at 462.239 kb on + strand, within DVU0412at 462.274 kb on + strand, within DVU0412at 462.329 kb on - strandat 462.360 kb on + strandat 462.368 kb on - strandat 462.591 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.609 kb on - strand, within trk1at 462.609 kb on - strand, within trk1at 462.653 kb on - strand, within trk1at 462.747 kb on + strand, within trk1at 462.755 kb on - strand, within trk1at 462.784 kb on + strand, within trk1at 462.784 kb on + strand, within trk1at 462.792 kb on - strand, within trk1at 462.792 kb on - strand, within trk1at 462.792 kb on - strand, within trk1at 462.818 kb on + strand, within trk1at 462.897 kb on - strand, within trk1at 462.961 kb on + strand, within trk1at 462.969 kb on - strand, within trk1at 462.969 kb on - strand, within trk1at 462.969 kb on - strand, within trk1at 462.978 kb on - strand, within trk1at 462.996 kb on + strand, within trk1at 463.029 kb on + strand, within trk1at 463.072 kb on - strand, within trk1at 463.087 kb on - strand, within trk1at 463.145 kb on + strand, within trk1at 463.189 kb on - strand, within trk1at 463.302 kb on + strand, within trk1at 463.315 kb on + strand, within trk1at 463.344 kb on - strand, within trk1at 463.510 kb on + strand, within trk1at 463.601 kb on + strand, within trk1at 463.606 kb on + strand, within trk1at 463.614 kb on - strand, within trk1at 463.648 kb on + strandat 463.653 kb on + strandat 463.655 kb on + strandat 463.661 kb on - strandat 463.663 kb on - strandat 463.678 kb on - strandat 463.678 kb on - strandat 463.740 kb on - strandat 463.752 kb on + strandat 463.757 kb on + strandat 463.765 kb on - strandat 463.826 kb on - strandat 463.843 kb on + strandat 463.926 kb on + strandat 463.952 kb on + strandat 464.004 kb on - strand, within tmeat 464.034 kb on + strand, within tmeat 464.037 kb on - strand, within tmeat 464.063 kb on - strand, within tmeat 464.099 kb on + strand, within tmeat 464.107 kb on - strand, within tmeat 464.157 kb on + strand, within tmeat 464.157 kb on + strand, within tmeat 464.157 kb on + strand, within tmeat 464.157 kb on + strand, within tmeat 464.373 kb on - strand, within tmeat 464.386 kb on - strand, within tmeat 464.420 kb on - strand, within tmeat 464.435 kb on - strand, within tmeat 464.519 kb on - strand, within tmeat 464.520 kb on - strand, within tmeat 464.580 kb on - strand, within tmeat 464.715 kb on - strand, within tme

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Formamide 10mM (N)
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461,480 - DVU0411 0.89 -0.2
461,504 + +1.3
461,512 - +0.6
461,521 + +0.0
461,539 - -0.4
461,634 + -0.5
461,816 + DVU0412 0.19 -1.0
461,824 - DVU0412 0.20 -0.0
461,903 + DVU0412 0.32 -0.0
461,965 - DVU0412 0.42 -0.0
462,012 - DVU0412 0.49 -0.4
462,046 + DVU0412 0.54 +0.6
462,046 + DVU0412 0.54 -0.5
462,054 - DVU0412 0.55 -0.7
462,054 - DVU0412 0.55 -0.1
462,054 - DVU0412 0.55 +0.6
462,054 - DVU0412 0.55 -1.6
462,181 - DVU0412 0.74 +2.0
462,239 + DVU0412 0.83 -1.6
462,239 + DVU0412 0.83 +1.6
462,274 + DVU0412 0.88 +2.0
462,329 - -2.0
462,360 + +0.0
462,368 - -0.3
462,591 - trk1 DVU0413 0.13 -0.3
462,599 - trk1 DVU0413 0.14 -1.6
462,599 - trk1 DVU0413 0.14 -0.0
462,599 - trk1 DVU0413 0.14 +1.6
462,609 - trk1 DVU0413 0.15 +1.6
462,609 - trk1 DVU0413 0.15 +0.6
462,653 - trk1 DVU0413 0.18 +1.0
462,747 + trk1 DVU0413 0.25 +0.6
462,755 - trk1 DVU0413 0.26 +0.6
462,784 + trk1 DVU0413 0.28 -0.6
462,784 + trk1 DVU0413 0.28 -1.0
462,792 - trk1 DVU0413 0.28 -0.4
462,792 - trk1 DVU0413 0.28 -0.7
462,792 - trk1 DVU0413 0.28 -0.5
462,818 + trk1 DVU0413 0.30 -1.4
462,897 - trk1 DVU0413 0.36 -1.6
462,961 + trk1 DVU0413 0.41 -0.7
462,969 - trk1 DVU0413 0.42 -2.4
462,969 - trk1 DVU0413 0.42 +0.7
462,969 - trk1 DVU0413 0.42 -0.4
462,978 - trk1 DVU0413 0.42 -1.7
462,996 + trk1 DVU0413 0.44 -1.0
463,029 + trk1 DVU0413 0.46 -0.2
463,072 - trk1 DVU0413 0.49 -1.6
463,087 - trk1 DVU0413 0.51 -0.2
463,145 + trk1 DVU0413 0.55 -1.3
463,189 - trk1 DVU0413 0.58 -0.9
463,302 + trk1 DVU0413 0.67 -0.8
463,315 + trk1 DVU0413 0.68 -0.1
463,344 - trk1 DVU0413 0.70 -1.0
463,510 + trk1 DVU0413 0.82 +0.6
463,601 + trk1 DVU0413 0.89 -0.0
463,606 + trk1 DVU0413 0.89 +0.9
463,614 - trk1 DVU0413 0.90 +1.3
463,648 + +1.6
463,653 + -0.4
463,655 + +0.1
463,661 - -0.4
463,663 - +2.6
463,678 - -1.6
463,678 - +0.5
463,740 - +0.6
463,752 + -0.2
463,757 + -1.2
463,765 - +0.6
463,826 - -0.2
463,843 + +2.2
463,926 + -0.0
463,952 + -0.0
464,004 - tme DVU0414 0.10 +0.4
464,034 + tme DVU0414 0.13 -0.4
464,037 - tme DVU0414 0.13 -0.5
464,063 - tme DVU0414 0.15 -0.1
464,099 + tme DVU0414 0.18 +0.8
464,107 - tme DVU0414 0.18 -0.0
464,157 + tme DVU0414 0.22 +0.3
464,157 + tme DVU0414 0.22 -0.7
464,157 + tme DVU0414 0.22 -0.7
464,157 + tme DVU0414 0.22 +0.6
464,373 - tme DVU0414 0.38 +1.1
464,386 - tme DVU0414 0.39 +0.1
464,420 - tme DVU0414 0.42 -0.4
464,435 - tme DVU0414 0.43 -0.0
464,519 - tme DVU0414 0.49 -0.4
464,520 - tme DVU0414 0.49 -0.1
464,580 - tme DVU0414 0.54 -1.3
464,715 - tme DVU0414 0.64 -1.2

Or see this region's nucleotide sequence