Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14445

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14435 and AO356_14440 overlap by 4 nucleotidesAO356_14440 and AO356_14445 are separated by 3 nucleotidesAO356_14445 and AO356_14450 overlap by 4 nucleotidesAO356_14450 and AO356_14455 are separated by 233 nucleotides AO356_14435: AO356_14435 - anthranilate phosphoribosyltransferase, at 3,284,551 to 3,285,600 _14435 AO356_14440: AO356_14440 - indole-3-glycerol-phosphate synthase, at 3,285,597 to 3,286,433 _14440 AO356_14445: AO356_14445 - lipoate--protein ligase, at 3,286,437 to 3,287,138 _14445 AO356_14450: AO356_14450 - cyclic AMP receptor protein, at 3,287,135 to 3,287,779 _14450 AO356_14455: AO356_14455 - peroxiredoxin, at 3,288,013 to 3,288,435 _14455 Position (kb) 3286 3287 3288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3285.463 kb on + strand, within AO356_14435at 3285.463 kb on + strand, within AO356_14435at 3285.463 kb on + strand, within AO356_14435at 3285.463 kb on + strand, within AO356_14435at 3285.464 kb on - strand, within AO356_14435at 3285.568 kb on - strandat 3285.576 kb on - strandat 3285.849 kb on + strand, within AO356_14440at 3285.850 kb on - strand, within AO356_14440at 3285.918 kb on + strand, within AO356_14440at 3286.320 kb on + strand, within AO356_14440at 3286.320 kb on + strand, within AO356_14440at 3286.321 kb on - strand, within AO356_14440at 3286.615 kb on + strand, within AO356_14445at 3286.707 kb on + strand, within AO356_14445at 3286.707 kb on + strand, within AO356_14445at 3286.708 kb on - strand, within AO356_14445at 3287.104 kb on - strandat 3287.386 kb on + strand, within AO356_14450at 3287.386 kb on + strand, within AO356_14450at 3287.387 kb on - strand, within AO356_14450at 3287.424 kb on + strand, within AO356_14450at 3287.424 kb on + strand, within AO356_14450at 3287.424 kb on + strand, within AO356_14450at 3287.424 kb on + strand, within AO356_14450at 3287.425 kb on - strand, within AO356_14450at 3287.425 kb on - strand, within AO356_14450at 3287.425 kb on - strand, within AO356_14450at 3287.469 kb on + strand, within AO356_14450at 3287.470 kb on - strand, within AO356_14450at 3287.621 kb on + strand, within AO356_14450at 3287.621 kb on + strand, within AO356_14450at 3287.621 kb on + strand, within AO356_14450at 3287.621 kb on + strand, within AO356_14450at 3287.621 kb on + strand, within AO356_14450at 3287.621 kb on + strand, within AO356_14450at 3287.622 kb on - strand, within AO356_14450at 3287.622 kb on - strand, within AO356_14450at 3287.622 kb on - strand, within AO356_14450at 3287.622 kb on - strand, within AO356_14450at 3287.768 kb on - strandat 3287.785 kb on + strandat 3287.786 kb on - strandat 3287.786 kb on - strandat 3287.786 kb on - strandat 3287.823 kb on + strandat 3287.824 kb on - strandat 3287.835 kb on + strandat 3287.835 kb on + strandat 3287.836 kb on - strandat 3287.839 kb on + strandat 3287.840 kb on - strandat 3287.858 kb on + strandat 3287.858 kb on + strandat 3287.882 kb on + strandat 3287.882 kb on + strandat 3287.883 kb on - strandat 3287.883 kb on - strandat 3287.898 kb on - strandat 3287.898 kb on - strandat 3287.900 kb on + strandat 3287.900 kb on + strandat 3287.900 kb on + strandat 3287.901 kb on - strandat 3287.901 kb on - strandat 3287.901 kb on - strandat 3287.901 kb on - strandat 3287.915 kb on - strandat 3287.915 kb on - strandat 3287.918 kb on + strandat 3287.918 kb on + strandat 3287.919 kb on - strandat 3287.941 kb on + strandat 3287.941 kb on + strandat 3287.942 kb on - strandat 3287.975 kb on + strandat 3287.975 kb on + strandat 3287.975 kb on + strandat 3287.975 kb on + strandat 3287.976 kb on - strandat 3287.994 kb on + strandat 3287.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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3,285,463 + AO356_14435 0.87 -0.6
3,285,463 + AO356_14435 0.87 -2.0
3,285,463 + AO356_14435 0.87 -0.6
3,285,463 + AO356_14435 0.87 -1.6
3,285,464 - AO356_14435 0.87 -2.9
3,285,568 - -3.0
3,285,576 - -3.0
3,285,849 + AO356_14440 0.30 -3.3
3,285,850 - AO356_14440 0.30 -2.4
3,285,918 + AO356_14440 0.38 -3.8
3,286,320 + AO356_14440 0.86 -1.5
3,286,320 + AO356_14440 0.86 -2.5
3,286,321 - AO356_14440 0.86 -2.7
3,286,615 + AO356_14445 0.25 -0.4
3,286,707 + AO356_14445 0.38 -0.4
3,286,707 + AO356_14445 0.38 +0.8
3,286,708 - AO356_14445 0.39 -0.2
3,287,104 - -0.4
3,287,386 + AO356_14450 0.39 +0.2
3,287,386 + AO356_14450 0.39 +0.8
3,287,387 - AO356_14450 0.39 -0.3
3,287,424 + AO356_14450 0.45 +0.7
3,287,424 + AO356_14450 0.45 -0.4
3,287,424 + AO356_14450 0.45 -0.5
3,287,424 + AO356_14450 0.45 -1.9
3,287,425 - AO356_14450 0.45 +0.1
3,287,425 - AO356_14450 0.45 +0.1
3,287,425 - AO356_14450 0.45 -0.5
3,287,469 + AO356_14450 0.52 +0.2
3,287,470 - AO356_14450 0.52 +0.2
3,287,621 + AO356_14450 0.75 +0.5
3,287,621 + AO356_14450 0.75 +0.5
3,287,621 + AO356_14450 0.75 -0.6
3,287,621 + AO356_14450 0.75 +1.2
3,287,621 + AO356_14450 0.75 -0.1
3,287,621 + AO356_14450 0.75 -0.2
3,287,622 - AO356_14450 0.76 -0.8
3,287,622 - AO356_14450 0.76 +0.3
3,287,622 - AO356_14450 0.76 +0.5
3,287,622 - AO356_14450 0.76 +0.3
3,287,768 - -0.1
3,287,785 + +0.3
3,287,786 - +0.2
3,287,786 - +0.0
3,287,786 - +0.0
3,287,823 + -0.2
3,287,824 - +0.1
3,287,835 + -0.1
3,287,835 + +1.1
3,287,836 - -1.2
3,287,839 + +0.4
3,287,840 - +1.3
3,287,858 + +0.0
3,287,858 + +0.6
3,287,882 + +1.0
3,287,882 + +0.5
3,287,883 - -0.8
3,287,883 - +0.1
3,287,898 - +0.9
3,287,898 - -2.3
3,287,900 + -0.5
3,287,900 + -0.6
3,287,900 + +0.5
3,287,901 - -0.5
3,287,901 - +0.0
3,287,901 - +0.9
3,287,901 - +0.8
3,287,915 - +0.3
3,287,915 - -0.1
3,287,918 + +0.2
3,287,918 + +0.4
3,287,919 - +0.1
3,287,941 + +0.8
3,287,941 + +1.8
3,287,942 - +0.4
3,287,975 + +0.1
3,287,975 + +1.2
3,287,975 + +2.1
3,287,975 + +0.2
3,287,976 - -0.1
3,287,994 + -0.3
3,287,994 + +0.3

Or see this region's nucleotide sequence