Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000356 and ABIE53_000357 are separated by 248 nucleotides ABIE53_000357 and ABIE53_000358 overlap by 44 nucleotides
ABIE53_000356: ABIE53_000356 - ABC-type multidrug transport system fused ATPase/permease subunit, at 383,194 to 383,913
_000356
ABIE53_000357: ABIE53_000357 - hypothetical protein, at 384,162 to 384,560
_000357
ABIE53_000358: ABIE53_000358 - hypothetical protein, at 384,517 to 385,242
_000358
Position (kb) 384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 383.900 kb on + strand at 383.900 kb on + strand at 383.900 kb on + strand at 383.900 kb on + strand at 383.912 kb on - strand at 383.912 kb on - strand at 383.919 kb on + strand at 383.919 kb on + strand at 383.919 kb on + strand at 383.919 kb on + strand at 383.919 kb on + strand at 383.920 kb on - strand at 383.920 kb on - strand at 383.920 kb on - strand at 383.952 kb on + strand at 383.961 kb on + strand at 383.961 kb on + strand at 383.961 kb on + strand at 383.990 kb on - strand at 384.027 kb on + strand at 384.027 kb on + strand at 384.028 kb on - strand at 384.028 kb on - strand at 384.028 kb on - strand at 384.030 kb on + strand at 384.030 kb on + strand at 384.031 kb on - strand at 384.031 kb on - strand at 384.085 kb on + strand at 384.085 kb on + strand at 384.085 kb on + strand at 384.085 kb on + strand at 384.086 kb on - strand at 384.086 kb on - strand at 384.086 kb on - strand at 384.086 kb on - strand at 384.097 kb on - strand at 384.097 kb on - strand at 384.097 kb on - strand at 384.100 kb on + strand at 384.100 kb on + strand at 384.100 kb on + strand at 384.101 kb on - strand at 384.101 kb on - strand at 384.101 kb on - strand at 384.101 kb on - strand at 384.161 kb on - strand at 384.161 kb on - strand at 384.173 kb on + strand at 384.173 kb on + strand at 384.174 kb on - strand at 384.174 kb on - strand at 384.174 kb on - strand at 384.179 kb on + strand at 384.180 kb on - strand at 384.180 kb on - strand at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.324 kb on + strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.325 kb on - strand, within ABIE53_000357 at 384.326 kb on + strand, within ABIE53_000357 at 384.326 kb on + strand, within ABIE53_000357 at 384.326 kb on + strand, within ABIE53_000357 at 384.326 kb on + strand, within ABIE53_000357 at 384.326 kb on + strand, within ABIE53_000357 at 384.326 kb on + strand, within ABIE53_000357 at 384.327 kb on - strand, within ABIE53_000357 at 384.327 kb on - strand, within ABIE53_000357 at 384.327 kb on - strand, within ABIE53_000357 at 384.372 kb on + strand, within ABIE53_000357 at 384.372 kb on + strand, within ABIE53_000357 at 384.372 kb on + strand, within ABIE53_000357 at 384.372 kb on + strand, within ABIE53_000357 at 384.372 kb on + strand, within ABIE53_000357 at 384.372 kb on + strand, within ABIE53_000357 at 384.373 kb on - strand, within ABIE53_000357 at 384.373 kb on - strand, within ABIE53_000357 at 384.373 kb on - strand, within ABIE53_000357 at 384.378 kb on + strand, within ABIE53_000357 at 384.378 kb on + strand, within ABIE53_000357 at 384.378 kb on + strand, within ABIE53_000357 at 384.378 kb on + strand, within ABIE53_000357 at 384.379 kb on - strand, within ABIE53_000357 at 384.379 kb on - strand, within ABIE53_000357 at 384.379 kb on - strand, within ABIE53_000357 at 384.379 kb on - strand, within ABIE53_000357 at 384.464 kb on + strand, within ABIE53_000357 at 384.464 kb on + strand, within ABIE53_000357 at 384.464 kb on + strand, within ABIE53_000357 at 384.464 kb on + strand, within ABIE53_000357 at 384.465 kb on - strand, within ABIE53_000357 at 384.465 kb on - strand, within ABIE53_000357 at 384.465 kb on - strand, within ABIE53_000357 at 384.465 kb on - strand, within ABIE53_000357 at 384.547 kb on + strand at 384.559 kb on - strand at 384.568 kb on + strand at 384.568 kb on + strand at 384.569 kb on - strand at 384.569 kb on - strand at 384.569 kb on - strand at 384.599 kb on + strand, within ABIE53_000358 at 384.599 kb on + strand, within ABIE53_000358 at 384.600 kb on - strand, within ABIE53_000358 at 384.629 kb on + strand, within ABIE53_000358 at 384.685 kb on + strand, within ABIE53_000358 at 384.686 kb on - strand, within ABIE53_000358 at 384.784 kb on + strand, within ABIE53_000358 at 384.784 kb on + strand, within ABIE53_000358 at 384.784 kb on + strand, within ABIE53_000358 at 384.784 kb on + strand, within ABIE53_000358 at 384.784 kb on + strand, within ABIE53_000358 at 384.784 kb on + strand, within ABIE53_000358 at 384.785 kb on - strand, within ABIE53_000358 at 384.785 kb on - strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.796 kb on + strand, within ABIE53_000358 at 384.797 kb on - strand, within ABIE53_000358 at 384.797 kb on - strand, within ABIE53_000358 at 384.797 kb on - strand, within ABIE53_000358 at 384.797 kb on - strand, within ABIE53_000358 at 384.886 kb on + strand, within ABIE53_000358 at 384.886 kb on + strand, within ABIE53_000358 at 384.886 kb on + strand, within ABIE53_000358 at 384.886 kb on + strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.887 kb on - strand, within ABIE53_000358 at 384.964 kb on + strand, within ABIE53_000358 at 384.964 kb on + strand, within ABIE53_000358 at 384.965 kb on - strand, within ABIE53_000358 at 385.045 kb on + strand, within ABIE53_000358 at 385.045 kb on + strand, within ABIE53_000358 at 385.045 kb on + strand, within ABIE53_000358 at 385.046 kb on - strand, within ABIE53_000358 at 385.046 kb on - strand, within ABIE53_000358 at 385.046 kb on - strand, within ABIE53_000358 at 385.073 kb on + strand, within ABIE53_000358 at 385.073 kb on + strand, within ABIE53_000358 at 385.073 kb on + strand, within ABIE53_000358 at 385.073 kb on + strand, within ABIE53_000358 at 385.074 kb on - strand, within ABIE53_000358 at 385.074 kb on - strand, within ABIE53_000358 at 385.074 kb on - strand, within ABIE53_000358 at 385.114 kb on + strand, within ABIE53_000358 at 385.114 kb on + strand, within ABIE53_000358 at 385.114 kb on + strand, within ABIE53_000358 at 385.114 kb on + strand, within ABIE53_000358 at 385.115 kb on - strand, within ABIE53_000358 at 385.115 kb on - strand, within ABIE53_000358 at 385.115 kb on - strand, within ABIE53_000358 at 385.115 kb on - strand, within ABIE53_000358 at 385.115 kb on - strand, within ABIE53_000358 at 385.241 kb on - strand at 385.241 kb on - strand at 385.292 kb on + strand at 385.292 kb on + strand at 385.292 kb on + strand at 385.292 kb on + strand at 385.292 kb on + strand at 385.292 kb on + strand at 385.292 kb on + strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.293 kb on - strand at 385.352 kb on + strand at 385.352 kb on + strand at 385.353 kb on - strand at 385.353 kb on - strand at 385.353 kb on - strand at 385.353 kb on - strand at 385.382 kb on - strand at 385.417 kb on + strand at 385.418 kb on - strand at 385.418 kb on - strand at 385.418 kb on - strand at 385.470 kb on + strand at 385.494 kb on - strand at 385.494 kb on - strand at 385.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 383,900 + -0.1 383,900 + -0.6 383,900 + -1.0 383,900 + +0.2 383,912 - +2.2 383,912 - -0.4 383,919 + -1.4 383,919 + -0.2 383,919 + +0.4 383,919 + +0.4 383,919 + +1.2 383,920 - +0.0 383,920 - -1.1 383,920 - +2.2 383,952 + +1.9 383,961 + +4.8 383,961 + -0.6 383,961 + -1.1 383,990 - +0.6 384,027 + -0.2 384,027 + +0.2 384,028 - -2.5 384,028 - -1.3 384,028 - -0.4 384,030 + -1.9 384,030 + -2.3 384,031 - +1.3 384,031 - -0.9 384,085 + +3.8 384,085 + +0.3 384,085 + -0.6 384,085 + +0.6 384,086 - -0.4 384,086 - +0.5 384,086 - -0.4 384,086 - -0.3 384,097 - +0.6 384,097 - +2.9 384,097 - -0.6 384,100 + -1.0 384,100 + +0.2 384,100 + +0.0 384,101 - +0.2 384,101 - -0.4 384,101 - +1.4 384,101 - +0.9 384,161 - -0.1 384,161 - -0.1 384,173 + +0.1 384,173 + -0.7 384,174 - +2.2 384,174 - -0.9 384,174 - -1.0 384,179 + -0.4 384,180 - -0.8 384,180 - +0.4 384,324 + ABIE53_000357 0.41 -2.4 384,324 + ABIE53_000357 0.41 -0.6 384,324 + ABIE53_000357 0.41 -0.1 384,324 + ABIE53_000357 0.41 -0.7 384,324 + ABIE53_000357 0.41 -0.8 384,324 + ABIE53_000357 0.41 -1.5 384,324 + ABIE53_000357 0.41 -1.9 384,324 + ABIE53_000357 0.41 -1.1 384,324 + ABIE53_000357 0.41 -0.0 384,324 + ABIE53_000357 0.41 +0.3 384,325 - ABIE53_000357 0.41 -0.3 384,325 - ABIE53_000357 0.41 -1.1 384,325 - ABIE53_000357 0.41 +2.2 384,325 - ABIE53_000357 0.41 -3.3 384,325 - ABIE53_000357 0.41 -1.0 384,325 - ABIE53_000357 0.41 -2.2 384,325 - ABIE53_000357 0.41 -1.7 384,326 + ABIE53_000357 0.41 -0.2 384,326 + ABIE53_000357 0.41 +0.4 384,326 + ABIE53_000357 0.41 +2.2 384,326 + ABIE53_000357 0.41 -0.2 384,326 + ABIE53_000357 0.41 +0.2 384,326 + ABIE53_000357 0.41 -0.6 384,327 - ABIE53_000357 0.41 -0.8 384,327 - ABIE53_000357 0.41 -2.6 384,327 - ABIE53_000357 0.41 -0.2 384,372 + ABIE53_000357 0.53 -1.7 384,372 + ABIE53_000357 0.53 +0.3 384,372 + ABIE53_000357 0.53 +2.2 384,372 + ABIE53_000357 0.53 -2.6 384,372 + ABIE53_000357 0.53 +0.9 384,372 + ABIE53_000357 0.53 +1.5 384,373 - ABIE53_000357 0.53 -0.6 384,373 - ABIE53_000357 0.53 -2.4 384,373 - ABIE53_000357 0.53 -0.5 384,378 + ABIE53_000357 0.54 -0.1 384,378 + ABIE53_000357 0.54 -0.9 384,378 + ABIE53_000357 0.54 +0.6 384,378 + ABIE53_000357 0.54 -1.5 384,379 - ABIE53_000357 0.54 -1.4 384,379 - ABIE53_000357 0.54 -0.1 384,379 - ABIE53_000357 0.54 -0.2 384,379 - ABIE53_000357 0.54 -1.9 384,464 + ABIE53_000357 0.76 +1.2 384,464 + ABIE53_000357 0.76 +0.6 384,464 + ABIE53_000357 0.76 +0.9 384,464 + ABIE53_000357 0.76 -1.9 384,465 - ABIE53_000357 0.76 -1.7 384,465 - ABIE53_000357 0.76 -1.3 384,465 - ABIE53_000357 0.76 +0.2 384,465 - ABIE53_000357 0.76 -0.8 384,547 + -0.6 384,559 - -0.5 384,568 + +0.6 384,568 + +3.2 384,569 - -0.4 384,569 - +0.5 384,569 - -1.2 384,599 + ABIE53_000358 0.11 -0.1 384,599 + ABIE53_000358 0.11 -0.1 384,600 - ABIE53_000358 0.11 +3.8 384,629 + ABIE53_000358 0.15 -2.0 384,685 + ABIE53_000358 0.23 +4.2 384,686 - ABIE53_000358 0.23 -0.1 384,784 + ABIE53_000358 0.37 -0.5 384,784 + ABIE53_000358 0.37 +0.6 384,784 + ABIE53_000358 0.37 +0.4 384,784 + ABIE53_000358 0.37 +0.6 384,784 + ABIE53_000358 0.37 -1.2 384,784 + ABIE53_000358 0.37 +0.9 384,785 - ABIE53_000358 0.37 -0.4 384,785 - ABIE53_000358 0.37 -0.5 384,796 + ABIE53_000358 0.38 -1.4 384,796 + ABIE53_000358 0.38 +0.8 384,796 + ABIE53_000358 0.38 -0.9 384,796 + ABIE53_000358 0.38 -0.8 384,796 + ABIE53_000358 0.38 -0.4 384,796 + ABIE53_000358 0.38 -1.0 384,796 + ABIE53_000358 0.38 -0.9 384,796 + ABIE53_000358 0.38 +0.5 384,797 - ABIE53_000358 0.39 +0.4 384,797 - ABIE53_000358 0.39 -0.1 384,797 - ABIE53_000358 0.39 +0.2 384,797 - ABIE53_000358 0.39 -0.3 384,886 + ABIE53_000358 0.51 -1.4 384,886 + ABIE53_000358 0.51 +0.9 384,886 + ABIE53_000358 0.51 -0.2 384,886 + ABIE53_000358 0.51 -0.3 384,887 - ABIE53_000358 0.51 +0.8 384,887 - ABIE53_000358 0.51 +2.0 384,887 - ABIE53_000358 0.51 +0.0 384,887 - ABIE53_000358 0.51 -0.4 384,887 - ABIE53_000358 0.51 -2.2 384,887 - ABIE53_000358 0.51 +1.9 384,887 - ABIE53_000358 0.51 -1.2 384,964 + ABIE53_000358 0.62 -2.2 384,964 + ABIE53_000358 0.62 -1.0 384,965 - ABIE53_000358 0.62 +0.4 385,045 + ABIE53_000358 0.73 +0.4 385,045 + ABIE53_000358 0.73 -0.1 385,045 + ABIE53_000358 0.73 -1.9 385,046 - ABIE53_000358 0.73 -1.5 385,046 - ABIE53_000358 0.73 -0.4 385,046 - ABIE53_000358 0.73 -0.2 385,073 + ABIE53_000358 0.77 -1.3 385,073 + ABIE53_000358 0.77 -2.1 385,073 + ABIE53_000358 0.77 +0.6 385,073 + ABIE53_000358 0.77 -0.7 385,074 - ABIE53_000358 0.77 +2.2 385,074 - ABIE53_000358 0.77 +1.5 385,074 - ABIE53_000358 0.77 -1.3 385,114 + ABIE53_000358 0.82 -1.7 385,114 + ABIE53_000358 0.82 +0.1 385,114 + ABIE53_000358 0.82 -0.6 385,114 + ABIE53_000358 0.82 +0.8 385,115 - ABIE53_000358 0.82 +0.2 385,115 - ABIE53_000358 0.82 -1.5 385,115 - ABIE53_000358 0.82 +1.2 385,115 - ABIE53_000358 0.82 +2.5 385,115 - ABIE53_000358 0.82 +3.2 385,241 - -0.8 385,241 - -1.0 385,292 + -0.6 385,292 + +1.2 385,292 + -1.1 385,292 + +0.2 385,292 + -1.5 385,292 + +1.6 385,292 + -0.4 385,293 - -0.9 385,293 - -0.1 385,293 - +1.4 385,293 - -0.5 385,293 - -0.8 385,293 - -0.9 385,293 - -0.1 385,293 - +0.7 385,293 - -0.5 385,352 + +0.8 385,352 + -0.3 385,353 - -0.1 385,353 - -1.3 385,353 - -1.4 385,353 - +1.5 385,382 - -1.5 385,417 + -1.2 385,418 - -0.6 385,418 - +1.6 385,418 - +0.6 385,470 + -1.2 385,494 - -0.9 385,494 - -0.2 385,536 + -0.1
Or see this region's nucleotide sequence