Experiment: MoLS4 with Formamide 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hmcC and hmcB are separated by 0 nucleotides hmcB and hmcA are separated by 18 nucleotides
DVU0534: hmcC - HmcC, 43.2 kd protein in hmc operon (voordouw), at 604,873 to 606,039
hmcC
DVU0535: hmcB - 40.1 kd protein in hmc operon (HmcB) (voordouw), at 606,040 to 607,152
hmcB
DVU0536: hmcA - HmcA; high-molecular-weight cytochrome c (voordouw), at 607,171 to 608,853
hmcA
Position (kb) 606
607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 605.054 kb on - strand, within hmcC at 605.154 kb on - strand, within hmcC at 605.235 kb on - strand, within hmcC at 605.320 kb on - strand, within hmcC at 605.445 kb on - strand, within hmcC at 605.449 kb on + strand, within hmcC at 605.470 kb on + strand, within hmcC at 605.476 kb on - strand, within hmcC at 605.497 kb on + strand, within hmcC at 605.497 kb on + strand, within hmcC at 605.497 kb on + strand, within hmcC at 605.504 kb on + strand, within hmcC at 605.512 kb on - strand, within hmcC at 605.545 kb on - strand, within hmcC at 605.666 kb on + strand, within hmcC at 605.704 kb on - strand, within hmcC at 605.711 kb on + strand, within hmcC at 605.856 kb on + strand, within hmcC at 605.869 kb on - strand, within hmcC at 605.869 kb on - strand, within hmcC at 605.922 kb on - strand, within hmcC at 605.958 kb on + strand at 605.966 kb on - strand at 605.967 kb on - strand at 606.093 kb on + strand at 606.121 kb on + strand at 606.143 kb on + strand at 606.203 kb on + strand, within hmcB at 606.203 kb on + strand, within hmcB at 606.203 kb on + strand, within hmcB at 606.203 kb on + strand, within hmcB at 606.208 kb on - strand, within hmcB at 606.257 kb on + strand, within hmcB at 606.262 kb on + strand, within hmcB at 606.265 kb on - strand, within hmcB at 606.344 kb on + strand, within hmcB at 606.349 kb on + strand, within hmcB at 606.376 kb on + strand, within hmcB at 606.438 kb on - strand, within hmcB at 606.525 kb on + strand, within hmcB at 606.531 kb on - strand, within hmcB at 606.555 kb on + strand, within hmcB at 606.573 kb on + strand, within hmcB at 606.595 kb on + strand, within hmcB at 606.661 kb on + strand, within hmcB at 606.663 kb on - strand, within hmcB at 606.670 kb on - strand, within hmcB at 606.863 kb on + strand, within hmcB at 606.984 kb on + strand, within hmcB at 607.019 kb on - strand, within hmcB at 607.037 kb on - strand, within hmcB at 607.037 kb on - strand, within hmcB at 607.037 kb on - strand, within hmcB at 607.081 kb on - strand at 607.098 kb on + strand at 607.247 kb on + strand at 607.247 kb on + strand at 607.255 kb on - strand at 607.349 kb on - strand, within hmcA at 607.395 kb on - strand, within hmcA at 607.512 kb on + strand, within hmcA at 607.549 kb on + strand, within hmcA at 607.601 kb on + strand, within hmcA at 607.604 kb on - strand, within hmcA at 607.609 kb on - strand, within hmcA at 607.609 kb on - strand, within hmcA at 607.625 kb on + strand, within hmcA at 607.625 kb on + strand, within hmcA at 607.630 kb on + strand, within hmcA at 607.680 kb on + strand, within hmcA at 607.734 kb on + strand, within hmcA at 607.742 kb on - strand, within hmcA at 607.811 kb on + strand, within hmcA at 607.829 kb on - strand, within hmcA at 607.840 kb on + strand, within hmcA at 607.844 kb on - strand, within hmcA at 607.932 kb on + strand, within hmcA at 607.940 kb on - strand, within hmcA at 607.979 kb on + strand, within hmcA at 607.992 kb on - strand, within hmcA at 608.012 kb on - strand, within hmcA at 608.044 kb on - strand, within hmcA at 608.044 kb on - strand, within hmcA at 608.044 kb on - strand, within hmcA at 608.093 kb on + strand, within hmcA at 608.099 kb on + strand, within hmcA at 608.101 kb on - strand, within hmcA
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Formamide 10mM (N) remove 605,054 - hmcC DVU0534 0.16 -0.8 605,154 - hmcC DVU0534 0.24 -0.4 605,235 - hmcC DVU0534 0.31 -1.3 605,320 - hmcC DVU0534 0.38 -0.8 605,445 - hmcC DVU0534 0.49 -2.1 605,449 + hmcC DVU0534 0.49 -0.6 605,470 + hmcC DVU0534 0.51 -0.7 605,476 - hmcC DVU0534 0.52 -1.3 605,497 + hmcC DVU0534 0.53 +0.3 605,497 + hmcC DVU0534 0.53 -0.5 605,497 + hmcC DVU0534 0.53 +0.3 605,504 + hmcC DVU0534 0.54 +0.1 605,512 - hmcC DVU0534 0.55 -0.8 605,545 - hmcC DVU0534 0.58 -0.6 605,666 + hmcC DVU0534 0.68 -1.2 605,704 - hmcC DVU0534 0.71 -0.5 605,711 + hmcC DVU0534 0.72 +0.2 605,856 + hmcC DVU0534 0.84 -0.4 605,869 - hmcC DVU0534 0.85 -0.5 605,869 - hmcC DVU0534 0.85 +0.3 605,922 - hmcC DVU0534 0.90 +0.8 605,958 + -0.7 605,966 - -1.6 605,967 - -0.8 606,093 + -0.5 606,121 + -0.5 606,143 + -1.1 606,203 + hmcB DVU0535 0.15 -0.7 606,203 + hmcB DVU0535 0.15 +0.3 606,203 + hmcB DVU0535 0.15 -0.7 606,203 + hmcB DVU0535 0.15 -0.2 606,208 - hmcB DVU0535 0.15 -1.3 606,257 + hmcB DVU0535 0.19 +0.0 606,262 + hmcB DVU0535 0.20 -0.7 606,265 - hmcB DVU0535 0.20 +1.3 606,344 + hmcB DVU0535 0.27 -0.9 606,349 + hmcB DVU0535 0.28 -3.0 606,376 + hmcB DVU0535 0.30 +1.3 606,438 - hmcB DVU0535 0.36 -1.7 606,525 + hmcB DVU0535 0.44 -0.8 606,531 - hmcB DVU0535 0.44 -1.6 606,555 + hmcB DVU0535 0.46 -1.3 606,573 + hmcB DVU0535 0.48 -1.5 606,595 + hmcB DVU0535 0.50 -0.5 606,661 + hmcB DVU0535 0.56 -1.0 606,663 - hmcB DVU0535 0.56 +0.0 606,670 - hmcB DVU0535 0.57 -1.0 606,863 + hmcB DVU0535 0.74 -0.4 606,984 + hmcB DVU0535 0.85 -1.0 607,019 - hmcB DVU0535 0.88 -2.6 607,037 - hmcB DVU0535 0.90 -1.4 607,037 - hmcB DVU0535 0.90 -1.3 607,037 - hmcB DVU0535 0.90 -0.1 607,081 - -0.3 607,098 + -0.8 607,247 + -0.7 607,247 + -2.6 607,255 - -0.1 607,349 - hmcA DVU0536 0.11 -0.7 607,395 - hmcA DVU0536 0.13 -0.7 607,512 + hmcA DVU0536 0.20 -0.8 607,549 + hmcA DVU0536 0.22 -0.3 607,601 + hmcA DVU0536 0.26 +0.0 607,604 - hmcA DVU0536 0.26 -0.9 607,609 - hmcA DVU0536 0.26 +1.3 607,609 - hmcA DVU0536 0.26 -1.7 607,625 + hmcA DVU0536 0.27 -1.0 607,625 + hmcA DVU0536 0.27 +0.5 607,630 + hmcA DVU0536 0.27 -1.1 607,680 + hmcA DVU0536 0.30 -0.3 607,734 + hmcA DVU0536 0.33 +0.8 607,742 - hmcA DVU0536 0.34 -0.5 607,811 + hmcA DVU0536 0.38 -0.8 607,829 - hmcA DVU0536 0.39 -1.0 607,840 + hmcA DVU0536 0.40 +0.3 607,844 - hmcA DVU0536 0.40 -1.0 607,932 + hmcA DVU0536 0.45 -1.1 607,940 - hmcA DVU0536 0.46 -0.6 607,979 + hmcA DVU0536 0.48 -1.4 607,992 - hmcA DVU0536 0.49 -0.5 608,012 - hmcA DVU0536 0.50 -1.5 608,044 - hmcA DVU0536 0.52 -1.2 608,044 - hmcA DVU0536 0.52 -0.9 608,044 - hmcA DVU0536 0.52 -1.3 608,093 + hmcA DVU0536 0.55 -1.2 608,099 + hmcA DVU0536 0.55 -0.3 608,101 - hmcA DVU0536 0.55 -0.7
Or see this region's nucleotide sequence