Experiment: Ferric citrate electron acceptor; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mshL and SO4112.1 overlap by 668 nucleotides SO4112.1 and mshK are separated by 487 nucleotides mshK and mshJ overlap by 14 nucleotides mshJ and SO_4115 overlap by 4 nucleotides
SO4112: mshL - MSHA biogenesis protein MshL (NCBI ptt file), at 4,270,814 to 4,272,496
mshL
SO4112.1: SO4112.1 - hypothetical protein (NCBI ptt file), at 4,271,829 to 4,272,023
SO4112.1
SO4113: mshK - MSHA biogenesis protein MshK (NCBI ptt file), at 4,272,511 to 4,272,828
mshK
SO4114: mshJ - MSHA biogenesis protein MshJ (NCBI ptt file), at 4,272,815 to 4,273,465
mshJ
SO_4115: SO_4115 - no description, at 4,273,462 to 4,273,989
_4115
Position (kb) 4272
4273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4271.646 kb on - strand, within mshL at 4271.985 kb on - strand at 4272.006 kb on - strand at 4272.007 kb on - strand at 4272.091 kb on + strand, within mshL at 4272.118 kb on + strand, within mshL at 4272.126 kb on + strand, within mshL at 4272.170 kb on + strand, within mshL at 4272.177 kb on + strand, within mshL at 4272.219 kb on - strand, within mshL at 4272.219 kb on - strand, within mshL at 4272.276 kb on + strand, within mshL at 4272.276 kb on + strand, within mshL at 4272.284 kb on - strand, within mshL at 4272.310 kb on - strand, within mshL at 4272.372 kb on - strand at 4272.422 kb on - strand at 4272.471 kb on + strand at 4272.472 kb on - strand at 4272.535 kb on - strand at 4272.590 kb on + strand, within mshK at 4272.598 kb on - strand, within mshK at 4272.615 kb on - strand, within mshK at 4272.701 kb on + strand, within mshK at 4272.906 kb on - strand, within mshJ at 4272.941 kb on - strand, within mshJ at 4272.979 kb on - strand, within mshJ at 4273.073 kb on - strand, within mshJ at 4273.129 kb on - strand, within mshJ at 4273.218 kb on + strand, within mshJ at 4273.218 kb on + strand, within mshJ at 4273.320 kb on + strand, within mshJ at 4273.474 kb on + strand at 4273.474 kb on + strand at 4273.474 kb on + strand at 4273.474 kb on + strand at 4273.476 kb on + strand at 4273.482 kb on - strand at 4273.484 kb on - strand at 4273.713 kb on + strand, within SO_4115 at 4273.721 kb on - strand, within SO_4115 at 4273.728 kb on - strand, within SO_4115 at 4273.742 kb on - strand, within SO_4115 at 4273.785 kb on + strand, within SO_4115 at 4273.793 kb on - strand, within SO_4115 at 4273.799 kb on - strand, within SO_4115 at 4273.804 kb on - strand, within SO_4115 at 4273.826 kb on + strand, within SO_4115 at 4273.826 kb on + strand, within SO_4115 at 4273.826 kb on + strand, within SO_4115 at 4273.826 kb on + strand, within SO_4115
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight remove 4,271,646 - mshL SO4112 0.49 -1.7 4,271,985 - -0.8 4,272,006 - -2.5 4,272,007 - -4.0 4,272,091 + mshL SO4112 0.76 -3.6 4,272,118 + mshL SO4112 0.77 +0.2 4,272,126 + mshL SO4112 0.78 -0.7 4,272,170 + mshL SO4112 0.81 -1.6 4,272,177 + mshL SO4112 0.81 -1.0 4,272,219 - mshL SO4112 0.83 -1.4 4,272,219 - mshL SO4112 0.83 -2.3 4,272,276 + mshL SO4112 0.87 -1.4 4,272,276 + mshL SO4112 0.87 -1.4 4,272,284 - mshL SO4112 0.87 -3.0 4,272,310 - mshL SO4112 0.89 -2.0 4,272,372 - -0.9 4,272,422 - -2.2 4,272,471 + -2.1 4,272,472 - -2.7 4,272,535 - -1.4 4,272,590 + mshK SO4113 0.25 -2.3 4,272,598 - mshK SO4113 0.27 -1.5 4,272,615 - mshK SO4113 0.33 -2.0 4,272,701 + mshK SO4113 0.60 -1.4 4,272,906 - mshJ SO4114 0.14 -2.8 4,272,941 - mshJ SO4114 0.19 -2.0 4,272,979 - mshJ SO4114 0.25 -1.0 4,273,073 - mshJ SO4114 0.40 -2.3 4,273,129 - mshJ SO4114 0.48 -3.0 4,273,218 + mshJ SO4114 0.62 -4.7 4,273,218 + mshJ SO4114 0.62 -0.4 4,273,320 + mshJ SO4114 0.78 -2.9 4,273,474 + -1.5 4,273,474 + -0.0 4,273,474 + -3.1 4,273,474 + -1.1 4,273,476 + -1.9 4,273,482 - +0.4 4,273,484 - +0.9 4,273,713 + SO_4115 0.48 -1.6 4,273,721 - SO_4115 0.49 -1.4 4,273,728 - SO_4115 0.50 -2.0 4,273,742 - SO_4115 0.53 -2.7 4,273,785 + SO_4115 0.61 +0.9 4,273,793 - SO_4115 0.63 -0.6 4,273,799 - SO_4115 0.64 -2.8 4,273,804 - SO_4115 0.65 -3.3 4,273,826 + SO_4115 0.69 -2.3 4,273,826 + SO_4115 0.69 -1.9 4,273,826 + SO_4115 0.69 -0.9 4,273,826 + SO_4115 0.69 -4.2
Or see this region's nucleotide sequence