Strain Fitness in Shewanella oneidensis MR-1 around SO4111

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4110 and mshM overlap by 4 nucleotidesmshM and mshL are separated by 6 nucleotides SO4110: SO4110 - MSHA biogenesis protein MshN, putative (NCBI ptt file), at 4,268,589 to 4,269,878 SO4110 SO4111: mshM - MSHA biogenesis protein MshM (NCBI ptt file), at 4,269,875 to 4,270,807 mshM SO4112: mshL - MSHA biogenesis protein MshL (NCBI ptt file), at 4,270,814 to 4,272,496 mshL Position (kb) 4269 4270 4271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4268.892 kb on + strand, within SO4110at 4268.905 kb on - strand, within SO4110at 4268.954 kb on + strand, within SO4110at 4268.954 kb on - strand, within SO4110at 4269.085 kb on - strand, within SO4110at 4269.090 kb on + strand, within SO4110at 4269.192 kb on + strand, within SO4110at 4269.220 kb on + strand, within SO4110at 4269.249 kb on + strand, within SO4110at 4269.257 kb on - strand, within SO4110at 4269.369 kb on - strand, within SO4110at 4269.496 kb on - strand, within SO4110at 4269.496 kb on - strand, within SO4110at 4269.583 kb on + strand, within SO4110at 4269.598 kb on - strand, within SO4110at 4269.739 kb on - strand, within SO4110at 4269.759 kb on + strandat 4269.831 kb on + strandat 4269.886 kb on + strandat 4269.888 kb on + strandat 4269.940 kb on - strandat 4269.980 kb on + strand, within mshMat 4269.988 kb on - strand, within mshMat 4270.000 kb on - strand, within mshMat 4270.071 kb on - strand, within mshMat 4270.150 kb on + strand, within mshMat 4270.160 kb on + strand, within mshMat 4270.189 kb on + strand, within mshMat 4270.255 kb on + strand, within mshMat 4270.277 kb on + strand, within mshMat 4270.414 kb on - strand, within mshMat 4270.414 kb on - strand, within mshMat 4270.424 kb on + strand, within mshMat 4270.424 kb on - strand, within mshMat 4270.432 kb on - strand, within mshMat 4270.441 kb on + strand, within mshMat 4270.480 kb on + strand, within mshMat 4270.542 kb on + strand, within mshMat 4270.550 kb on - strand, within mshMat 4270.555 kb on - strand, within mshMat 4270.555 kb on - strand, within mshMat 4270.580 kb on - strand, within mshMat 4270.590 kb on - strand, within mshMat 4270.726 kb on - strandat 4270.729 kb on + strandat 4270.848 kb on + strandat 4270.881 kb on + strandat 4271.027 kb on - strand, within mshLat 4271.051 kb on + strand, within mshLat 4271.217 kb on + strand, within mshLat 4271.337 kb on + strand, within mshLat 4271.368 kb on + strand, within mshLat 4271.374 kb on + strand, within mshLat 4271.374 kb on + strand, within mshLat 4271.374 kb on + strand, within mshLat 4271.382 kb on - strand, within mshLat 4271.382 kb on - strand, within mshLat 4271.384 kb on + strand, within mshLat 4271.392 kb on - strand, within mshLat 4271.646 kb on - strand, within mshL

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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4,268,892 + SO4110 0.23 -1.3
4,268,905 - SO4110 0.24 -1.9
4,268,954 + SO4110 0.28 -1.5
4,268,954 - SO4110 0.28 +4.4
4,269,085 - SO4110 0.38 +0.3
4,269,090 + SO4110 0.39 +2.3
4,269,192 + SO4110 0.47 -2.6
4,269,220 + SO4110 0.49 -2.0
4,269,249 + SO4110 0.51 -4.6
4,269,257 - SO4110 0.52 -1.5
4,269,369 - SO4110 0.60 +0.3
4,269,496 - SO4110 0.70 -0.7
4,269,496 - SO4110 0.70 +2.3
4,269,583 + SO4110 0.77 -1.6
4,269,598 - SO4110 0.78 -2.6
4,269,739 - SO4110 0.89 -1.2
4,269,759 + -2.3
4,269,831 + +0.9
4,269,886 + -1.2
4,269,888 + -1.8
4,269,940 - +0.1
4,269,980 + mshM SO4111 0.11 -1.5
4,269,988 - mshM SO4111 0.12 +0.6
4,270,000 - mshM SO4111 0.13 -4.7
4,270,071 - mshM SO4111 0.21 -1.2
4,270,150 + mshM SO4111 0.29 -2.6
4,270,160 + mshM SO4111 0.31 -0.5
4,270,189 + mshM SO4111 0.34 -4.0
4,270,255 + mshM SO4111 0.41 -2.7
4,270,277 + mshM SO4111 0.43 -0.7
4,270,414 - mshM SO4111 0.58 -0.0
4,270,414 - mshM SO4111 0.58 -0.4
4,270,424 + mshM SO4111 0.59 -2.1
4,270,424 - mshM SO4111 0.59 -0.3
4,270,432 - mshM SO4111 0.60 +0.2
4,270,441 + mshM SO4111 0.61 -0.3
4,270,480 + mshM SO4111 0.65 -2.9
4,270,542 + mshM SO4111 0.71 -4.4
4,270,550 - mshM SO4111 0.72 -2.0
4,270,555 - mshM SO4111 0.73 -2.4
4,270,555 - mshM SO4111 0.73 -1.7
4,270,580 - mshM SO4111 0.76 -1.6
4,270,590 - mshM SO4111 0.77 -1.2
4,270,726 - -1.1
4,270,729 + -2.7
4,270,848 + -1.0
4,270,881 + -2.6
4,271,027 - mshL SO4112 0.13 -3.0
4,271,051 + mshL SO4112 0.14 -2.1
4,271,217 + mshL SO4112 0.24 -1.3
4,271,337 + mshL SO4112 0.31 -1.3
4,271,368 + mshL SO4112 0.33 -0.8
4,271,374 + mshL SO4112 0.33 -1.1
4,271,374 + mshL SO4112 0.33 -2.3
4,271,374 + mshL SO4112 0.33 -3.2
4,271,382 - mshL SO4112 0.34 -3.7
4,271,382 - mshL SO4112 0.34 -1.3
4,271,384 + mshL SO4112 0.34 -2.4
4,271,392 - mshL SO4112 0.34 -1.6
4,271,646 - mshL SO4112 0.49 -1.7

Or see this region's nucleotide sequence