Experiment: Ferric citrate electron acceptor; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_3823 and SO3824 overlap by 4 nucleotides SO3824 and SO_3825 are separated by 21 nucleotides SO_3825 and SO3826 are separated by 20 nucleotides SO3826 and kdsA are separated by 259 nucleotides
SO_3823: SO_3823 - no description, at 3,974,312 to 3,975,433
_3823
SO3824: SO3824 - ISSod4, transposase (NCBI ptt file), at 3,975,430 to 3,976,632
SO3824
SO_3825: SO_3825 - no description, at 3,976,654 to 3,976,818
_3825
SO3826: SO3826 - conserved domain protein (NCBI ptt file), at 3,976,839 to 3,977,114
SO3826
SO3827: kdsA - 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI ptt file), at 3,977,374 to 3,978,222
kdsA
Position (kb)
3975
3976
3977 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3976.882 kb on + strand, within SO3826 at 3976.910 kb on + strand, within SO3826 at 3976.998 kb on + strand, within SO3826 at 3977.004 kb on + strand, within SO3826 at 3977.039 kb on - strand, within SO3826 at 3977.078 kb on + strand, within SO3826 at 3977.086 kb on - strand, within SO3826 at 3977.086 kb on - strand, within SO3826 at 3977.086 kb on - strand, within SO3826 at 3977.086 kb on - strand, within SO3826 at 3977.104 kb on + strand at 3977.142 kb on - strand at 3977.163 kb on - strand at 3977.218 kb on - strand at 3977.236 kb on + strand at 3977.245 kb on + strand at 3977.253 kb on + strand at 3977.253 kb on + strand at 3977.253 kb on + strand at 3977.254 kb on - strand at 3977.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight remove 3,976,882 + SO3826 0.16 -1.5 3,976,910 + SO3826 0.26 +1.1 3,976,998 + SO3826 0.58 -0.1 3,977,004 + SO3826 0.60 -0.6 3,977,039 - SO3826 0.72 -0.7 3,977,078 + SO3826 0.87 -1.5 3,977,086 - SO3826 0.89 -0.3 3,977,086 - SO3826 0.89 +1.1 3,977,086 - SO3826 0.89 -1.9 3,977,086 - SO3826 0.89 +0.3 3,977,104 + -2.3 3,977,142 - -1.6 3,977,163 - -3.1 3,977,218 - +0.0 3,977,236 + -2.8 3,977,245 + -3.7 3,977,253 + +0.2 3,977,253 + -1.2 3,977,253 + -1.3 3,977,254 - -1.1 3,977,335 + -0.5
Or see this region's nucleotide sequence