Strain Fitness in Shewanella oneidensis MR-1 around SO3824

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_3823 and SO3824 overlap by 4 nucleotidesSO3824 and SO_3825 are separated by 21 nucleotidesSO_3825 and SO3826 are separated by 20 nucleotidesSO3826 and kdsA are separated by 259 nucleotides SO_3823: SO_3823 - no description, at 3,974,312 to 3,975,433 _3823 SO3824: SO3824 - ISSod4, transposase (NCBI ptt file), at 3,975,430 to 3,976,632 SO3824 SO_3825: SO_3825 - no description, at 3,976,654 to 3,976,818 _3825 SO3826: SO3826 - conserved domain protein (NCBI ptt file), at 3,976,839 to 3,977,114 SO3826 SO3827: kdsA - 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI ptt file), at 3,977,374 to 3,978,222 kdsA Position (kb) 3975 3976 3977Strain fitness (log2 ratio) -3 -2 -1 0 1at 3976.882 kb on + strand, within SO3826at 3976.910 kb on + strand, within SO3826at 3976.998 kb on + strand, within SO3826at 3977.004 kb on + strand, within SO3826at 3977.039 kb on - strand, within SO3826at 3977.078 kb on + strand, within SO3826at 3977.086 kb on - strand, within SO3826at 3977.086 kb on - strand, within SO3826at 3977.086 kb on - strand, within SO3826at 3977.086 kb on - strand, within SO3826at 3977.104 kb on + strandat 3977.142 kb on - strandat 3977.163 kb on - strandat 3977.218 kb on - strandat 3977.236 kb on + strandat 3977.245 kb on + strandat 3977.253 kb on + strandat 3977.253 kb on + strandat 3977.253 kb on + strandat 3977.254 kb on - strandat 3977.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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3,976,882 + SO3826 0.16 -1.5
3,976,910 + SO3826 0.26 +1.1
3,976,998 + SO3826 0.58 -0.1
3,977,004 + SO3826 0.60 -0.6
3,977,039 - SO3826 0.72 -0.7
3,977,078 + SO3826 0.87 -1.5
3,977,086 - SO3826 0.89 -0.3
3,977,086 - SO3826 0.89 +1.1
3,977,086 - SO3826 0.89 -1.9
3,977,086 - SO3826 0.89 +0.3
3,977,104 + -2.3
3,977,142 - -1.6
3,977,163 - -3.1
3,977,218 - +0.0
3,977,236 + -2.8
3,977,245 + -3.7
3,977,253 + +0.2
3,977,253 + -1.2
3,977,253 + -1.3
3,977,254 - -1.1
3,977,335 + -0.5

Or see this region's nucleotide sequence