Experiment: Ferric citrate electron acceptor; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3683 and SO3684 are separated by 22 nucleotides SO3684 and SO3685 are separated by 88 nucleotides SO3685 and SO3686 overlap by 1 nucleotides
SO3683: SO3683 - coniferyl aldehyde dehydrogenase (NCBI ptt file), at 3,833,351 to 3,834,775
SO3683
SO3684: SO3684 - transcriptional regulator, TetR family (NCBI ptt file), at 3,834,798 to 3,835,406
SO3684
SO3685: SO3685 - curli production assembly/transport component CsgG, putative (NCBI ptt file), at 3,835,495 to 3,836,301
SO3685
SO3686: SO3686 - curli production assembly/transport component CsgF, putative (NCBI ptt file), at 3,836,301 to 3,836,696
SO3686
Position (kb)
3834
3835
3836 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3833.843 kb on + strand, within SO3683 at 3833.905 kb on + strand, within SO3683 at 3833.905 kb on + strand, within SO3683 at 3833.905 kb on + strand, within SO3683 at 3834.003 kb on + strand, within SO3683 at 3834.003 kb on + strand, within SO3683 at 3834.011 kb on - strand, within SO3683 at 3834.011 kb on - strand, within SO3683 at 3834.011 kb on - strand, within SO3683 at 3834.124 kb on - strand, within SO3683 at 3834.124 kb on - strand, within SO3683 at 3834.124 kb on - strand, within SO3683 at 3834.124 kb on - strand, within SO3683 at 3834.149 kb on - strand, within SO3683 at 3834.211 kb on + strand, within SO3683 at 3834.320 kb on + strand, within SO3683 at 3834.446 kb on - strand, within SO3683 at 3834.614 kb on + strand, within SO3683 at 3834.632 kb on - strand, within SO3683 at 3834.637 kb on - strand at 3834.743 kb on - strand at 3834.792 kb on - strand at 3834.794 kb on + strand at 3834.802 kb on - strand at 3835.087 kb on + strand, within SO3684 at 3835.091 kb on - strand, within SO3684 at 3835.293 kb on + strand, within SO3684 at 3835.325 kb on + strand, within SO3684 at 3835.488 kb on + strand at 3835.498 kb on + strand at 3835.552 kb on + strand at 3835.744 kb on + strand, within SO3685 at 3835.782 kb on + strand, within SO3685 at 3835.999 kb on + strand, within SO3685 at 3835.999 kb on - strand, within SO3685 at 3835.999 kb on - strand, within SO3685 at 3835.999 kb on - strand, within SO3685 at 3836.014 kb on - strand, within SO3685 at 3836.055 kb on + strand, within SO3685 at 3836.107 kb on - strand, within SO3685 at 3836.209 kb on - strand, within SO3685 at 3836.209 kb on - strand, within SO3685 at 3836.209 kb on - strand, within SO3685
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight remove 3,833,843 + SO3683 0.35 -0.7 3,833,905 + SO3683 0.39 +0.1 3,833,905 + SO3683 0.39 -0.9 3,833,905 + SO3683 0.39 +1.2 3,834,003 + SO3683 0.46 -2.8 3,834,003 + SO3683 0.46 -0.1 3,834,011 - SO3683 0.46 +0.2 3,834,011 - SO3683 0.46 -1.9 3,834,011 - SO3683 0.46 -0.9 3,834,124 - SO3683 0.54 -1.1 3,834,124 - SO3683 0.54 +0.7 3,834,124 - SO3683 0.54 -2.5 3,834,124 - SO3683 0.54 +0.1 3,834,149 - SO3683 0.56 -0.7 3,834,211 + SO3683 0.60 +0.5 3,834,320 + SO3683 0.68 -0.1 3,834,446 - SO3683 0.77 +0.2 3,834,614 + SO3683 0.89 +2.0 3,834,632 - SO3683 0.90 +0.8 3,834,637 - -1.6 3,834,743 - +2.5 3,834,792 - +0.6 3,834,794 + +0.5 3,834,802 - -1.6 3,835,087 + SO3684 0.47 -1.4 3,835,091 - SO3684 0.48 -1.6 3,835,293 + SO3684 0.81 -1.1 3,835,325 + SO3684 0.87 -1.6 3,835,488 + -0.1 3,835,498 + +0.2 3,835,552 + -0.2 3,835,744 + SO3685 0.31 +0.0 3,835,782 + SO3685 0.36 -2.2 3,835,999 + SO3685 0.62 -0.2 3,835,999 - SO3685 0.62 -2.2 3,835,999 - SO3685 0.62 -0.1 3,835,999 - SO3685 0.62 +0.6 3,836,014 - SO3685 0.64 +1.1 3,836,055 + SO3685 0.69 -0.3 3,836,107 - SO3685 0.76 +0.3 3,836,209 - SO3685 0.88 -0.4 3,836,209 - SO3685 0.88 -0.8 3,836,209 - SO3685 0.88 -0.1
Or see this region's nucleotide sequence