Strain Fitness in Shewanella oneidensis MR-1 around SO2839

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2838 and SO2839 are separated by 114 nucleotidesSO2839 and SO2840 are separated by 56 nucleotidesSO2840 and SO2841 are separated by 91 nucleotides SO2838: SO2838 - ATP-dependent RNA helicase, DEAD box family (NCBI ptt file), at 2,955,718 to 2,957,067 SO2838 SO2839: SO2839 - hypothetical protein (NCBI ptt file), at 2,957,182 to 2,957,619 SO2839 SO2840: SO2840 - conserved hypothetical protein (NCBI ptt file), at 2,957,676 to 2,958,197 SO2840 SO2841: SO2841 - hypothetical protein (NCBI ptt file), at 2,958,289 to 2,958,756 SO2841 Position (kb) 2957 2958Strain fitness (log2 ratio) -3 -2 -1 0 1at 2956.923 kb on + strand, within SO2838at 2956.929 kb on + strand, within SO2838at 2957.093 kb on - strandat 2957.109 kb on + strandat 2957.167 kb on + strandat 2957.226 kb on - strand, within SO2839at 2957.390 kb on - strand, within SO2839at 2957.552 kb on + strand, within SO2839at 2957.795 kb on - strand, within SO2840at 2958.014 kb on - strand, within SO2840at 2958.425 kb on + strand, within SO2841

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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2,956,923 + SO2838 0.89 -0.3
2,956,929 + SO2838 0.90 +0.2
2,957,093 - -0.5
2,957,109 + -0.3
2,957,167 + -2.3
2,957,226 - SO2839 0.10 -1.3
2,957,390 - SO2839 0.47 -3.1
2,957,552 + SO2839 0.84 -0.9
2,957,795 - SO2840 0.23 +0.0
2,958,014 - SO2840 0.65 -1.3
2,958,425 + SO2841 0.29 +1.1

Or see this region's nucleotide sequence