Strain Fitness in Shewanella oneidensis MR-1 around SO2499

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2498 and SO2499 are separated by 43 nucleotidesSO2499 and SO2500 are separated by 163 nucleotidesSO2500 and tRNA-Tyr-4 are separated by 125 nucleotidestRNA-Tyr-4 and tRNA-Tyr-3 are separated by 39 nucleotides SO2498: SO2498 - sensory box protein (NCBI ptt file), at 2,623,052 to 2,625,379 SO2498 SO2499: SO2499 - conserved hypothetical protein (NCBI ptt file), at 2,625,423 to 2,625,710 SO2499 SO2500: SO2500 - conserved hypothetical protein (NCBI ptt file), at 2,625,874 to 2,626,362 SO2500 SO_t045: tRNA-Tyr-4 - tRNA-Tyr (RefSeq), at 2,626,488 to 2,626,572 tRNA-Tyr-4 SO_t046: tRNA-Tyr-3 - tRNA-Tyr (RefSeq), at 2,626,612 to 2,626,696 tRNA-Tyr-3 Position (kb) 2625 2626Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2624.583 kb on + strand, within SO2498at 2624.583 kb on + strand, within SO2498at 2624.583 kb on + strand, within SO2498at 2624.583 kb on + strand, within SO2498at 2624.583 kb on + strand, within SO2498at 2624.755 kb on - strand, within SO2498at 2624.822 kb on - strand, within SO2498at 2624.824 kb on + strand, within SO2498at 2624.824 kb on + strand, within SO2498at 2624.872 kb on + strand, within SO2498at 2624.880 kb on - strand, within SO2498at 2624.945 kb on + strand, within SO2498at 2624.953 kb on - strand, within SO2498at 2625.013 kb on + strand, within SO2498at 2625.301 kb on + strandat 2625.309 kb on - strandat 2625.494 kb on - strand, within SO2499at 2625.496 kb on + strand, within SO2499at 2625.547 kb on + strand, within SO2499at 2625.550 kb on - strand, within SO2499at 2625.712 kb on + strandat 2625.817 kb on - strandat 2625.858 kb on + strandat 2625.881 kb on - strandat 2625.883 kb on + strandat 2625.883 kb on + strandat 2625.980 kb on - strand, within SO2500at 2625.983 kb on + strand, within SO2500at 2625.999 kb on - strand, within SO2500at 2626.000 kb on + strand, within SO2500at 2626.064 kb on + strand, within SO2500

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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2,624,583 + SO2498 0.66 -0.6
2,624,583 + SO2498 0.66 -2.5
2,624,583 + SO2498 0.66 -0.5
2,624,583 + SO2498 0.66 -1.2
2,624,583 + SO2498 0.66 +0.3
2,624,755 - SO2498 0.73 -1.7
2,624,822 - SO2498 0.76 -2.0
2,624,824 + SO2498 0.76 -1.5
2,624,824 + SO2498 0.76 +1.6
2,624,872 + SO2498 0.78 -0.1
2,624,880 - SO2498 0.79 -0.2
2,624,945 + SO2498 0.81 +1.3
2,624,953 - SO2498 0.82 -0.1
2,625,013 + SO2498 0.84 -0.5
2,625,301 + +4.2
2,625,309 - -1.2
2,625,494 - SO2499 0.25 -1.4
2,625,496 + SO2499 0.25 -1.1
2,625,547 + SO2499 0.43 -1.1
2,625,550 - SO2499 0.44 -0.5
2,625,712 + -1.2
2,625,817 - -1.0
2,625,858 + -2.7
2,625,881 - +0.4
2,625,883 + -2.5
2,625,883 + +0.4
2,625,980 - SO2500 0.22 -0.5
2,625,983 + SO2500 0.22 +0.7
2,625,999 - SO2500 0.26 +1.6
2,626,000 + SO2500 0.26 -0.8
2,626,064 + SO2500 0.39 -1.0

Or see this region's nucleotide sequence