Strain Fitness in Shewanella oneidensis MR-1 around SO2089

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2088 and hypA are separated by 85 nucleotideshypA and hypE overlap by 1 nucleotides SO2088: SO2088 - lipid A biosynthesis acyltransferase, putative (NCBI ptt file), at 2,184,640 to 2,185,578 SO2088 SO2089: hypA - hydrogenase expression/formation protein HypA (NCBI ptt file), at 2,185,664 to 2,186,020 hypA SO2090: hypE - hydrogenase expression/formation protein HypE (NCBI ptt file), at 2,186,020 to 2,187,039 hypE Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -2 -1 0 1at 2184.948 kb on - strand, within SO2088at 2184.950 kb on - strand, within SO2088at 2185.166 kb on + strand, within SO2088at 2185.359 kb on + strand, within SO2088at 2185.719 kb on + strand, within hypAat 2185.769 kb on - strand, within hypAat 2185.871 kb on - strand, within hypAat 2185.900 kb on + strand, within hypAat 2186.151 kb on + strand, within hypEat 2186.267 kb on + strand, within hypEat 2186.274 kb on - strand, within hypEat 2186.454 kb on + strand, within hypEat 2186.631 kb on - strand, within hypEat 2186.788 kb on + strand, within hypEat 2186.788 kb on + strand, within hypEat 2186.863 kb on - strand, within hypEat 2186.869 kb on + strand, within hypEat 2186.920 kb on + strand, within hypE

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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2,184,948 - SO2088 0.33 -0.2
2,184,950 - SO2088 0.33 -1.0
2,185,166 + SO2088 0.56 -2.1
2,185,359 + SO2088 0.77 -0.8
2,185,719 + hypA SO2089 0.15 -1.3
2,185,769 - hypA SO2089 0.29 -1.3
2,185,871 - hypA SO2089 0.58 -2.2
2,185,900 + hypA SO2089 0.66 -0.9
2,186,151 + hypE SO2090 0.13 -1.6
2,186,267 + hypE SO2090 0.24 -0.2
2,186,274 - hypE SO2090 0.25 +0.9
2,186,454 + hypE SO2090 0.43 +0.1
2,186,631 - hypE SO2090 0.60 -1.6
2,186,788 + hypE SO2090 0.75 +0.9
2,186,788 + hypE SO2090 0.75 -1.1
2,186,863 - hypE SO2090 0.83 -1.4
2,186,869 + hypE SO2090 0.83 +1.6
2,186,920 + hypE SO2090 0.88 -0.4

Or see this region's nucleotide sequence