Experiment: Ferric citrate electron acceptor; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1565 and SO1566 are separated by 20 nucleotides SO1566 and SO1568 are separated by 162 nucleotides SO1568 and SO1569 are separated by 57 nucleotides
SO1565: SO1565 - magnesium transporter, putative (NCBI ptt file), at 1,642,222 to 1,643,592
SO1565
SO1566: SO1566 - acetyltransferase, GNAT family (NCBI ptt file), at 1,643,613 to 1,644,131
SO1566
SO1568: SO1568 - hypothetical protein (NCBI ptt file), at 1,644,294 to 1,644,833
SO1568
SO1569: SO1569 - integral membrane domain protein (NCBI ptt file), at 1,644,891 to 1,645,742
SO1569
Position (kb)
1644
1645 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1643.476 kb on + strand at 1643.494 kb on - strand at 1643.715 kb on - strand, within SO1566 at 1643.819 kb on - strand, within SO1566 at 1643.837 kb on - strand, within SO1566 at 1643.877 kb on + strand, within SO1566 at 1643.931 kb on - strand, within SO1566 at 1643.953 kb on - strand, within SO1566 at 1644.032 kb on + strand, within SO1566 at 1644.040 kb on - strand, within SO1566 at 1644.108 kb on - strand at 1644.121 kb on - strand at 1644.287 kb on - strand at 1644.400 kb on + strand, within SO1568 at 1644.482 kb on - strand, within SO1568 at 1644.545 kb on + strand, within SO1568 at 1644.561 kb on + strand, within SO1568 at 1644.883 kb on + strand at 1644.988 kb on - strand, within SO1569 at 1645.065 kb on + strand, within SO1569 at 1645.114 kb on + strand, within SO1569 at 1645.183 kb on - strand, within SO1569 at 1645.221 kb on - strand, within SO1569 at 1645.227 kb on - strand, within SO1569 at 1645.227 kb on - strand, within SO1569 at 1645.227 kb on - strand, within SO1569 at 1645.227 kb on - strand, within SO1569 at 1645.227 kb on - strand, within SO1569 at 1645.244 kb on - strand, within SO1569 at 1645.325 kb on + strand, within SO1569 at 1645.400 kb on - strand, within SO1569 at 1645.400 kb on - strand, within SO1569 at 1645.400 kb on - strand, within SO1569 at 1645.409 kb on + strand, within SO1569 at 1645.445 kb on + strand, within SO1569 at 1645.482 kb on + strand, within SO1569 at 1645.482 kb on + strand, within SO1569 at 1645.482 kb on + strand, within SO1569 at 1645.488 kb on + strand, within SO1569 at 1645.572 kb on - strand, within SO1569 at 1645.580 kb on - strand, within SO1569 at 1645.582 kb on + strand, within SO1569 at 1645.605 kb on - strand, within SO1569 at 1645.607 kb on + strand, within SO1569 at 1645.658 kb on - strand at 1645.683 kb on - strand at 1645.688 kb on + strand at 1645.707 kb on + strand at 1645.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight remove 1,643,476 + -2.3 1,643,494 - -0.1 1,643,715 - SO1566 0.20 -0.4 1,643,819 - SO1566 0.40 -0.3 1,643,837 - SO1566 0.43 -0.8 1,643,877 + SO1566 0.51 +0.8 1,643,931 - SO1566 0.61 -1.3 1,643,953 - SO1566 0.66 +0.7 1,644,032 + SO1566 0.81 +0.2 1,644,040 - SO1566 0.82 +0.9 1,644,108 - +1.3 1,644,121 - -0.2 1,644,287 - -0.0 1,644,400 + SO1568 0.20 -2.5 1,644,482 - SO1568 0.35 -0.2 1,644,545 + SO1568 0.46 -3.1 1,644,561 + SO1568 0.49 -0.3 1,644,883 + +1.1 1,644,988 - SO1569 0.11 -0.4 1,645,065 + SO1569 0.20 +0.4 1,645,114 + SO1569 0.26 -0.3 1,645,183 - SO1569 0.34 +2.1 1,645,221 - SO1569 0.39 +0.7 1,645,227 - SO1569 0.39 +0.1 1,645,227 - SO1569 0.39 -0.8 1,645,227 - SO1569 0.39 -0.3 1,645,227 - SO1569 0.39 +1.6 1,645,227 - SO1569 0.39 +0.9 1,645,244 - SO1569 0.41 +0.1 1,645,325 + SO1569 0.51 +0.8 1,645,400 - SO1569 0.60 -3.5 1,645,400 - SO1569 0.60 +0.4 1,645,400 - SO1569 0.60 -0.2 1,645,409 + SO1569 0.61 +1.8 1,645,445 + SO1569 0.65 -0.1 1,645,482 + SO1569 0.69 -1.4 1,645,482 + SO1569 0.69 +1.3 1,645,482 + SO1569 0.69 +1.6 1,645,488 + SO1569 0.70 -0.5 1,645,572 - SO1569 0.80 -0.2 1,645,580 - SO1569 0.81 -0.5 1,645,582 + SO1569 0.81 -0.8 1,645,605 - SO1569 0.84 +1.1 1,645,607 + SO1569 0.84 -0.2 1,645,658 - -1.4 1,645,683 - +0.0 1,645,688 + +0.9 1,645,707 + +1.3 1,645,778 + +0.6
Or see this region's nucleotide sequence