Strain Fitness in Shewanella oneidensis MR-1 around SO1568

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1565 and SO1566 are separated by 20 nucleotidesSO1566 and SO1568 are separated by 162 nucleotidesSO1568 and SO1569 are separated by 57 nucleotides SO1565: SO1565 - magnesium transporter, putative (NCBI ptt file), at 1,642,222 to 1,643,592 SO1565 SO1566: SO1566 - acetyltransferase, GNAT family (NCBI ptt file), at 1,643,613 to 1,644,131 SO1566 SO1568: SO1568 - hypothetical protein (NCBI ptt file), at 1,644,294 to 1,644,833 SO1568 SO1569: SO1569 - integral membrane domain protein (NCBI ptt file), at 1,644,891 to 1,645,742 SO1569 Position (kb) 1644 1645Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1643.476 kb on + strandat 1643.494 kb on - strandat 1643.715 kb on - strand, within SO1566at 1643.819 kb on - strand, within SO1566at 1643.837 kb on - strand, within SO1566at 1643.877 kb on + strand, within SO1566at 1643.931 kb on - strand, within SO1566at 1643.953 kb on - strand, within SO1566at 1644.032 kb on + strand, within SO1566at 1644.040 kb on - strand, within SO1566at 1644.108 kb on - strandat 1644.121 kb on - strandat 1644.287 kb on - strandat 1644.400 kb on + strand, within SO1568at 1644.482 kb on - strand, within SO1568at 1644.545 kb on + strand, within SO1568at 1644.561 kb on + strand, within SO1568at 1644.883 kb on + strandat 1644.988 kb on - strand, within SO1569at 1645.065 kb on + strand, within SO1569at 1645.114 kb on + strand, within SO1569at 1645.183 kb on - strand, within SO1569at 1645.221 kb on - strand, within SO1569at 1645.227 kb on - strand, within SO1569at 1645.227 kb on - strand, within SO1569at 1645.227 kb on - strand, within SO1569at 1645.227 kb on - strand, within SO1569at 1645.227 kb on - strand, within SO1569at 1645.244 kb on - strand, within SO1569at 1645.325 kb on + strand, within SO1569at 1645.400 kb on - strand, within SO1569at 1645.400 kb on - strand, within SO1569at 1645.400 kb on - strand, within SO1569at 1645.409 kb on + strand, within SO1569at 1645.445 kb on + strand, within SO1569at 1645.482 kb on + strand, within SO1569at 1645.482 kb on + strand, within SO1569at 1645.482 kb on + strand, within SO1569at 1645.488 kb on + strand, within SO1569at 1645.572 kb on - strand, within SO1569at 1645.580 kb on - strand, within SO1569at 1645.582 kb on + strand, within SO1569at 1645.605 kb on - strand, within SO1569at 1645.607 kb on + strand, within SO1569at 1645.658 kb on - strandat 1645.683 kb on - strandat 1645.688 kb on + strandat 1645.707 kb on + strandat 1645.778 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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1,643,476 + -2.3
1,643,494 - -0.1
1,643,715 - SO1566 0.20 -0.4
1,643,819 - SO1566 0.40 -0.3
1,643,837 - SO1566 0.43 -0.8
1,643,877 + SO1566 0.51 +0.8
1,643,931 - SO1566 0.61 -1.3
1,643,953 - SO1566 0.66 +0.7
1,644,032 + SO1566 0.81 +0.2
1,644,040 - SO1566 0.82 +0.9
1,644,108 - +1.3
1,644,121 - -0.2
1,644,287 - -0.0
1,644,400 + SO1568 0.20 -2.5
1,644,482 - SO1568 0.35 -0.2
1,644,545 + SO1568 0.46 -3.1
1,644,561 + SO1568 0.49 -0.3
1,644,883 + +1.1
1,644,988 - SO1569 0.11 -0.4
1,645,065 + SO1569 0.20 +0.4
1,645,114 + SO1569 0.26 -0.3
1,645,183 - SO1569 0.34 +2.1
1,645,221 - SO1569 0.39 +0.7
1,645,227 - SO1569 0.39 +0.1
1,645,227 - SO1569 0.39 -0.8
1,645,227 - SO1569 0.39 -0.3
1,645,227 - SO1569 0.39 +1.6
1,645,227 - SO1569 0.39 +0.9
1,645,244 - SO1569 0.41 +0.1
1,645,325 + SO1569 0.51 +0.8
1,645,400 - SO1569 0.60 -3.5
1,645,400 - SO1569 0.60 +0.4
1,645,400 - SO1569 0.60 -0.2
1,645,409 + SO1569 0.61 +1.8
1,645,445 + SO1569 0.65 -0.1
1,645,482 + SO1569 0.69 -1.4
1,645,482 + SO1569 0.69 +1.3
1,645,482 + SO1569 0.69 +1.6
1,645,488 + SO1569 0.70 -0.5
1,645,572 - SO1569 0.80 -0.2
1,645,580 - SO1569 0.81 -0.5
1,645,582 + SO1569 0.81 -0.8
1,645,605 - SO1569 0.84 +1.1
1,645,607 + SO1569 0.84 -0.2
1,645,658 - -1.4
1,645,683 - +0.0
1,645,688 + +0.9
1,645,707 + +1.3
1,645,778 + +0.6

Or see this region's nucleotide sequence