Strain Fitness in Shewanella oneidensis MR-1 around SO1476

Experiment: Ferric citrate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1474 and SO1475 overlap by 11 nucleotidesSO1475 and smpA are separated by 91 nucleotidessmpA and SO1478 are separated by 455 nucleotides SO1474: SO1474 - conserved hypothetical protein (NCBI ptt file), at 1,539,325 to 1,539,762 SO1474 SO1475: SO1475 - conserved hypothetical protein (NCBI ptt file), at 1,539,752 to 1,540,087 SO1475 SO1476: smpA - small protein A (NCBI ptt file), at 1,540,179 to 1,540,670 smpA SO1478: SO1478 - methylase, putative (NCBI ptt file), at 1,541,126 to 1,541,899 SO1478 Position (kb) 1540 1541Strain fitness (log2 ratio) -2 -1 0 1 2at 1539.261 kb on + strandat 1539.261 kb on + strandat 1539.288 kb on + strandat 1540.039 kb on - strand, within SO1475at 1540.043 kb on + strand, within SO1475at 1540.043 kb on + strand, within SO1475at 1540.287 kb on - strand, within smpAat 1540.353 kb on - strand, within smpAat 1540.760 kb on + strandat 1540.767 kb on + strandat 1540.907 kb on - strandat 1541.135 kb on + strandat 1541.178 kb on + strandat 1541.230 kb on + strand, within SO1478at 1541.250 kb on + strand, within SO1478at 1541.337 kb on - strand, within SO1478at 1541.486 kb on + strand, within SO1478at 1541.631 kb on + strand, within SO1478

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight
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1,539,261 + -0.9
1,539,261 + -0.5
1,539,288 + +2.2
1,540,039 - SO1475 0.85 +0.6
1,540,043 + SO1475 0.87 +2.1
1,540,043 + SO1475 0.87 -1.2
1,540,287 - smpA SO1476 0.22 -1.2
1,540,353 - smpA SO1476 0.35 -1.5
1,540,760 + +0.5
1,540,767 + -0.0
1,540,907 - -1.8
1,541,135 + -0.2
1,541,178 + +0.7
1,541,230 + SO1478 0.13 -0.6
1,541,250 + SO1478 0.16 +0.6
1,541,337 - SO1478 0.27 -0.8
1,541,486 + SO1478 0.47 +1.0
1,541,631 + SO1478 0.65 -0.8

Or see this region's nucleotide sequence