Experiment: Ferric citrate electron acceptor; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0521 and mscL are separated by 85 nucleotides mscL and SO0523 are separated by 204 nucleotides SO0523 and SO0524 are separated by 244 nucleotides
SO0521: SO0521 - conserved hypothetical protein (NCBI ptt file), at 545,137 to 545,460
SO0521
SO0522: mscL - large conductance mechanosensitive channel protein (NCBI ptt file), at 545,546 to 545,956
mscL
SO0523: SO0523 - transcriptional regulator, LysR family (NCBI ptt file), at 546,161 to 547,093
SO0523
SO0524: SO0524 - HlyD family secretion protein (NCBI ptt file), at 547,338 to 548,243
SO0524
Position (kb) 546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 545.219 kb on + strand, within SO0521 at 545.227 kb on + strand, within SO0521 at 545.277 kb on + strand, within SO0521 at 545.285 kb on - strand, within SO0521 at 545.291 kb on + strand, within SO0521 at 545.292 kb on - strand, within SO0521 at 545.344 kb on + strand, within SO0521 at 545.359 kb on - strand, within SO0521 at 545.385 kb on + strand, within SO0521 at 545.385 kb on + strand, within SO0521 at 545.419 kb on + strand, within SO0521 at 545.419 kb on + strand, within SO0521 at 545.460 kb on + strand at 545.463 kb on - strand at 545.557 kb on + strand at 545.562 kb on + strand at 545.570 kb on - strand at 545.570 kb on - strand at 545.570 kb on - strand at 545.614 kb on - strand, within mscL at 545.761 kb on - strand, within mscL at 545.779 kb on - strand, within mscL at 545.781 kb on + strand, within mscL at 545.807 kb on + strand, within mscL at 545.807 kb on + strand, within mscL at 545.815 kb on - strand, within mscL at 545.962 kb on - strand at 546.078 kb on - strand at 546.129 kb on + strand at 546.213 kb on + strand at 546.250 kb on + strand at 546.265 kb on + strand, within SO0523 at 546.276 kb on + strand, within SO0523 at 546.287 kb on + strand, within SO0523 at 546.305 kb on - strand, within SO0523 at 546.329 kb on - strand, within SO0523 at 546.393 kb on - strand, within SO0523 at 546.395 kb on - strand, within SO0523 at 546.464 kb on - strand, within SO0523 at 546.499 kb on - strand, within SO0523 at 546.501 kb on + strand, within SO0523 at 546.506 kb on + strand, within SO0523 at 546.615 kb on + strand, within SO0523 at 546.718 kb on + strand, within SO0523 at 546.731 kb on + strand, within SO0523 at 546.741 kb on + strand, within SO0523 at 546.795 kb on - strand, within SO0523 at 546.843 kb on + strand, within SO0523 at 546.851 kb on - strand, within SO0523 at 546.875 kb on + strand, within SO0523 at 546.933 kb on - strand, within SO0523 at 546.939 kb on - strand, within SO0523 at 547.005 kb on + strand at 547.043 kb on - strand at 547.044 kb on - strand at 547.155 kb on + strand at 547.163 kb on - strand at 547.163 kb on - strand at 547.208 kb on + strand at 547.208 kb on + strand at 547.251 kb on + strand at 547.357 kb on + strand at 547.409 kb on + strand at 547.479 kb on + strand, within SO0524 at 547.479 kb on + strand, within SO0524 at 547.487 kb on - strand, within SO0524 at 547.503 kb on + strand, within SO0524 at 547.524 kb on + strand, within SO0524 at 547.565 kb on + strand, within SO0524 at 547.570 kb on + strand, within SO0524 at 547.578 kb on - strand, within SO0524 at 547.581 kb on + strand, within SO0524 at 547.608 kb on - strand, within SO0524 at 547.623 kb on + strand, within SO0524 at 547.693 kb on - strand, within SO0524 at 547.747 kb on - strand, within SO0524 at 547.777 kb on - strand, within SO0524 at 547.814 kb on - strand, within SO0524 at 547.885 kb on + strand, within SO0524 at 547.890 kb on + strand, within SO0524 at 547.890 kb on + strand, within SO0524 at 547.898 kb on - strand, within SO0524 at 547.898 kb on - strand, within SO0524 at 547.910 kb on + strand, within SO0524 at 547.910 kb on + strand, within SO0524 at 547.920 kb on + strand, within SO0524 at 547.928 kb on - strand, within SO0524 at 547.980 kb on + strand, within SO0524 at 547.980 kb on + strand, within SO0524 at 547.985 kb on + strand, within SO0524 at 547.993 kb on - strand, within SO0524 at 547.993 kb on - strand, within SO0524 at 548.039 kb on + strand, within SO0524
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight remove 545,219 + SO0521 0.25 +0.4 545,227 + SO0521 0.28 -0.5 545,277 + SO0521 0.43 +0.7 545,285 - SO0521 0.46 -2.6 545,291 + SO0521 0.48 -0.6 545,292 - SO0521 0.48 +1.0 545,344 + SO0521 0.64 -1.9 545,359 - SO0521 0.69 +0.8 545,385 + SO0521 0.77 -1.8 545,385 + SO0521 0.77 -2.6 545,419 + SO0521 0.87 +0.1 545,419 + SO0521 0.87 +0.5 545,460 + -1.5 545,463 - -1.5 545,557 + +2.5 545,562 + -0.2 545,570 - -0.8 545,570 - -0.1 545,570 - +0.4 545,614 - mscL SO0522 0.17 +0.4 545,761 - mscL SO0522 0.52 -0.8 545,779 - mscL SO0522 0.57 +1.0 545,781 + mscL SO0522 0.57 +0.8 545,807 + mscL SO0522 0.64 +1.9 545,807 + mscL SO0522 0.64 -0.3 545,815 - mscL SO0522 0.65 +0.6 545,962 - -0.2 546,078 - -1.2 546,129 + -0.9 546,213 + +0.5 546,250 + -0.5 546,265 + SO0523 0.11 -0.6 546,276 + SO0523 0.12 -1.6 546,287 + SO0523 0.14 +0.2 546,305 - SO0523 0.15 +2.1 546,329 - SO0523 0.18 +1.6 546,393 - SO0523 0.25 +2.3 546,395 - SO0523 0.25 -2.1 546,464 - SO0523 0.32 +0.8 546,499 - SO0523 0.36 +0.4 546,501 + SO0523 0.36 +0.5 546,506 + SO0523 0.37 -0.9 546,615 + SO0523 0.49 -0.1 546,718 + SO0523 0.60 +1.6 546,731 + SO0523 0.61 -1.5 546,741 + SO0523 0.62 +1.2 546,795 - SO0523 0.68 -2.0 546,843 + SO0523 0.73 +0.2 546,851 - SO0523 0.74 -0.5 546,875 + SO0523 0.77 +0.5 546,933 - SO0523 0.83 +0.3 546,939 - SO0523 0.83 +0.6 547,005 + +0.1 547,043 - -1.4 547,044 - -2.0 547,155 + -0.5 547,163 - -1.8 547,163 - -0.3 547,208 + +1.3 547,208 + -0.2 547,251 + -1.9 547,357 + +3.4 547,409 + +0.2 547,479 + SO0524 0.16 -1.1 547,479 + SO0524 0.16 -1.1 547,487 - SO0524 0.16 +0.3 547,503 + SO0524 0.18 +0.3 547,524 + SO0524 0.21 -2.7 547,565 + SO0524 0.25 -0.1 547,570 + SO0524 0.26 -1.2 547,578 - SO0524 0.26 +0.3 547,581 + SO0524 0.27 +1.7 547,608 - SO0524 0.30 -2.0 547,623 + SO0524 0.31 +0.6 547,693 - SO0524 0.39 +1.9 547,747 - SO0524 0.45 -0.3 547,777 - SO0524 0.48 +3.0 547,814 - SO0524 0.53 +1.5 547,885 + SO0524 0.60 -2.0 547,890 + SO0524 0.61 -0.6 547,890 + SO0524 0.61 +0.3 547,898 - SO0524 0.62 -0.7 547,898 - SO0524 0.62 -0.2 547,910 + SO0524 0.63 -3.3 547,910 + SO0524 0.63 -1.9 547,920 + SO0524 0.64 +0.3 547,928 - SO0524 0.65 +1.3 547,980 + SO0524 0.71 -1.6 547,980 + SO0524 0.71 +0.6 547,985 + SO0524 0.71 +0.0 547,993 - SO0524 0.72 -1.7 547,993 - SO0524 0.72 -1.2 548,039 + SO0524 0.77 +0.7
Or see this region's nucleotide sequence