Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26965 and BWI76_RS26970 are separated by 441 nucleotides BWI76_RS26970 and BWI76_RS26975 are separated by 236 nucleotides BWI76_RS26975 and BWI76_RS26980 are separated by 262 nucleotides
BWI76_RS26965: BWI76_RS26965 - hypothetical protein, at 5,593,807 to 5,594,517
_RS26965
BWI76_RS26970: BWI76_RS26970 - aromatic acid/H+ symport family MFS transporter, at 5,594,959 to 5,596,317
_RS26970
BWI76_RS26975: BWI76_RS26975 - transcriptional regulator, at 5,596,554 to 5,596,847
_RS26975
BWI76_RS26980: BWI76_RS26980 - cold-shock protein, at 5,597,110 to 5,597,322
_RS26980
Position (kb) 5594
5595
5596
5597 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5594.199 kb on + strand, within BWI76_RS26965 at 5594.199 kb on + strand, within BWI76_RS26965 at 5594.245 kb on - strand, within BWI76_RS26965 at 5594.274 kb on + strand, within BWI76_RS26965 at 5594.380 kb on - strand, within BWI76_RS26965 at 5594.572 kb on - strand at 5594.574 kb on + strand at 5594.582 kb on - strand at 5594.582 kb on - strand at 5594.582 kb on - strand at 5594.602 kb on - strand at 5594.663 kb on + strand at 5594.675 kb on + strand at 5595.095 kb on + strand, within BWI76_RS26970 at 5595.103 kb on - strand, within BWI76_RS26970 at 5595.103 kb on - strand, within BWI76_RS26970 at 5595.295 kb on - strand, within BWI76_RS26970 at 5595.295 kb on - strand, within BWI76_RS26970 at 5595.323 kb on + strand, within BWI76_RS26970 at 5595.414 kb on - strand, within BWI76_RS26970 at 5595.434 kb on + strand, within BWI76_RS26970 at 5595.618 kb on - strand, within BWI76_RS26970 at 5595.640 kb on - strand, within BWI76_RS26970 at 5595.650 kb on - strand, within BWI76_RS26970 at 5595.869 kb on + strand, within BWI76_RS26970 at 5595.869 kb on - strand, within BWI76_RS26970 at 5596.261 kb on + strand at 5596.264 kb on - strand at 5596.353 kb on - strand at 5596.358 kb on + strand at 5596.376 kb on - strand at 5596.403 kb on - strand at 5596.403 kb on - strand at 5596.508 kb on + strand at 5596.508 kb on + strand at 5596.591 kb on + strand, within BWI76_RS26975 at 5596.684 kb on + strand, within BWI76_RS26975 at 5596.692 kb on - strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.740 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.771 kb on - strand, within BWI76_RS26975 at 5596.772 kb on - strand, within BWI76_RS26975 at 5596.774 kb on + strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.788 kb on + strand, within BWI76_RS26975 at 5596.802 kb on + strand, within BWI76_RS26975 at 5596.820 kb on + strand at 5596.828 kb on - strand at 5596.953 kb on + strand at 5596.989 kb on - strand at 5597.063 kb on + strand at 5597.063 kb on + strand at 5597.071 kb on - strand at 5597.159 kb on + strand, within BWI76_RS26980 at 5597.208 kb on + strand, within BWI76_RS26980 at 5597.216 kb on - strand, within BWI76_RS26980 at 5597.218 kb on + strand, within BWI76_RS26980 at 5597.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 5,594,199 + BWI76_RS26965 0.55 -0.0 5,594,199 + BWI76_RS26965 0.55 +0.1 5,594,245 - BWI76_RS26965 0.62 +1.1 5,594,274 + BWI76_RS26965 0.66 -0.5 5,594,380 - BWI76_RS26965 0.81 +0.8 5,594,572 - -0.5 5,594,574 + -0.5 5,594,582 - +0.3 5,594,582 - +0.7 5,594,582 - -0.2 5,594,602 - -0.4 5,594,663 + -1.2 5,594,675 + +0.6 5,595,095 + BWI76_RS26970 0.10 -1.8 5,595,103 - BWI76_RS26970 0.11 +0.5 5,595,103 - BWI76_RS26970 0.11 -0.1 5,595,295 - BWI76_RS26970 0.25 +0.2 5,595,295 - BWI76_RS26970 0.25 -2.0 5,595,323 + BWI76_RS26970 0.27 +1.7 5,595,414 - BWI76_RS26970 0.33 +1.6 5,595,434 + BWI76_RS26970 0.35 +0.8 5,595,618 - BWI76_RS26970 0.48 +0.7 5,595,640 - BWI76_RS26970 0.50 -1.5 5,595,650 - BWI76_RS26970 0.51 +0.4 5,595,869 + BWI76_RS26970 0.67 +1.0 5,595,869 - BWI76_RS26970 0.67 +0.6 5,596,261 + -2.3 5,596,264 - -0.3 5,596,353 - -0.3 5,596,358 + -0.1 5,596,376 - -0.7 5,596,403 - -1.3 5,596,403 - +0.7 5,596,508 + -0.6 5,596,508 + +0.8 5,596,591 + BWI76_RS26975 0.13 -0.2 5,596,684 + BWI76_RS26975 0.44 +0.2 5,596,692 - BWI76_RS26975 0.47 +0.5 5,596,729 + BWI76_RS26975 0.60 +0.4 5,596,729 + BWI76_RS26975 0.60 +0.3 5,596,729 + BWI76_RS26975 0.60 +0.3 5,596,740 - BWI76_RS26975 0.63 -0.4 5,596,748 - BWI76_RS26975 0.66 -2.6 5,596,748 - BWI76_RS26975 0.66 +1.2 5,596,763 + BWI76_RS26975 0.71 -0.1 5,596,763 + BWI76_RS26975 0.71 -0.1 5,596,771 - BWI76_RS26975 0.74 -0.8 5,596,772 - BWI76_RS26975 0.74 -0.5 5,596,774 + BWI76_RS26975 0.75 -0.2 5,596,782 - BWI76_RS26975 0.78 +0.2 5,596,782 - BWI76_RS26975 0.78 +0.1 5,596,782 - BWI76_RS26975 0.78 +0.0 5,596,784 + BWI76_RS26975 0.78 +0.6 5,596,784 + BWI76_RS26975 0.78 +3.0 5,596,788 + BWI76_RS26975 0.80 +1.4 5,596,802 + BWI76_RS26975 0.84 +0.6 5,596,820 + +1.1 5,596,828 - +0.6 5,596,953 + -0.2 5,596,989 - -0.1 5,597,063 + +1.3 5,597,063 + -0.0 5,597,071 - -1.5 5,597,159 + BWI76_RS26980 0.23 -1.0 5,597,208 + BWI76_RS26980 0.46 +1.0 5,597,216 - BWI76_RS26980 0.50 +1.0 5,597,218 + BWI76_RS26980 0.51 -0.5 5,597,218 + +1.0
Or see this region's nucleotide sequence