Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26720 and BWI76_RS26725 are separated by 119 nucleotides BWI76_RS26725 and BWI76_RS26730 are separated by 250 nucleotides
BWI76_RS26720: BWI76_RS26720 - short-chain dehydrogenase/reductase SDR, at 5,532,695 to 5,533,453
_RS26720
BWI76_RS26725: BWI76_RS26725 - LysR family transcriptional regulator, at 5,533,573 to 5,534,472
_RS26725
BWI76_RS26730: BWI76_RS26730 - inner membrane protein YhjD, at 5,534,723 to 5,535,754
_RS26730
Position (kb)
5533
5534
5535 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5532.593 kb on + strand at 5532.613 kb on - strand at 5532.628 kb on + strand at 5532.628 kb on + strand at 5532.628 kb on + strand at 5532.630 kb on + strand at 5532.655 kb on - strand at 5532.659 kb on + strand at 5532.664 kb on + strand at 5532.672 kb on - strand at 5532.672 kb on - strand at 5532.672 kb on - strand at 5532.672 kb on - strand at 5532.674 kb on + strand at 5532.683 kb on - strand at 5532.691 kb on - strand at 5532.710 kb on + strand at 5532.710 kb on + strand at 5532.718 kb on + strand at 5532.726 kb on - strand at 5532.726 kb on - strand at 5532.726 kb on - strand at 5532.726 kb on - strand at 5532.748 kb on + strand at 5532.748 kb on + strand at 5532.751 kb on - strand at 5532.751 kb on - strand at 5532.751 kb on - strand at 5532.756 kb on - strand at 5532.796 kb on + strand, within BWI76_RS26720 at 5532.801 kb on + strand, within BWI76_RS26720 at 5532.804 kb on - strand, within BWI76_RS26720 at 5532.809 kb on - strand, within BWI76_RS26720 at 5532.809 kb on - strand, within BWI76_RS26720 at 5532.846 kb on + strand, within BWI76_RS26720 at 5532.854 kb on - strand, within BWI76_RS26720 at 5532.854 kb on - strand, within BWI76_RS26720 at 5532.980 kb on + strand, within BWI76_RS26720 at 5532.988 kb on - strand, within BWI76_RS26720 at 5533.070 kb on + strand, within BWI76_RS26720 at 5533.092 kb on + strand, within BWI76_RS26720 at 5533.162 kb on - strand, within BWI76_RS26720 at 5533.232 kb on + strand at 5533.599 kb on + strand at 5533.607 kb on - strand at 5533.610 kb on - strand at 5533.610 kb on - strand at 5533.646 kb on + strand at 5533.654 kb on - strand at 5533.654 kb on - strand at 5533.700 kb on + strand, within BWI76_RS26725 at 5533.755 kb on - strand, within BWI76_RS26725 at 5533.778 kb on + strand, within BWI76_RS26725 at 5533.804 kb on - strand, within BWI76_RS26725 at 5533.818 kb on + strand, within BWI76_RS26725 at 5533.826 kb on - strand, within BWI76_RS26725 at 5533.840 kb on - strand, within BWI76_RS26725 at 5533.937 kb on + strand, within BWI76_RS26725 at 5533.984 kb on + strand, within BWI76_RS26725 at 5533.984 kb on + strand, within BWI76_RS26725 at 5533.992 kb on - strand, within BWI76_RS26725 at 5533.992 kb on - strand, within BWI76_RS26725 at 5534.021 kb on + strand, within BWI76_RS26725 at 5534.067 kb on - strand, within BWI76_RS26725 at 5534.177 kb on + strand, within BWI76_RS26725 at 5534.177 kb on + strand, within BWI76_RS26725 at 5534.393 kb on - strand at 5534.430 kb on - strand at 5534.430 kb on - strand at 5534.531 kb on - strand at 5534.589 kb on + strand at 5534.597 kb on - strand at 5534.597 kb on - strand at 5534.753 kb on + strand at 5534.811 kb on + strand at 5534.883 kb on + strand, within BWI76_RS26730 at 5534.884 kb on + strand at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.247 kb on - strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.336 kb on - strand, within BWI76_RS26730 at 5535.388 kb on + strand, within BWI76_RS26730 at 5535.412 kb on + strand, within BWI76_RS26730
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 5,532,593 + +1.1 5,532,613 - +0.3 5,532,628 + -1.8 5,532,628 + +0.2 5,532,628 + -2.6 5,532,630 + +0.5 5,532,655 - +1.1 5,532,659 + +0.1 5,532,664 + -0.5 5,532,672 - +2.6 5,532,672 - +0.3 5,532,672 - +1.2 5,532,672 - -1.3 5,532,674 + -1.5 5,532,683 - +1.1 5,532,691 - +0.2 5,532,710 + +0.6 5,532,710 + +0.1 5,532,718 + -2.3 5,532,726 - +0.5 5,532,726 - +0.3 5,532,726 - -0.7 5,532,726 - -1.8 5,532,748 + +0.8 5,532,748 + -2.5 5,532,751 - +0.1 5,532,751 - -2.9 5,532,751 - -0.6 5,532,756 - -1.3 5,532,796 + BWI76_RS26720 0.13 -1.5 5,532,801 + BWI76_RS26720 0.14 +0.5 5,532,804 - BWI76_RS26720 0.14 +0.6 5,532,809 - BWI76_RS26720 0.15 -1.5 5,532,809 - BWI76_RS26720 0.15 +0.5 5,532,846 + BWI76_RS26720 0.20 -1.8 5,532,854 - BWI76_RS26720 0.21 +0.6 5,532,854 - BWI76_RS26720 0.21 -1.1 5,532,980 + BWI76_RS26720 0.38 +0.2 5,532,988 - BWI76_RS26720 0.39 +0.4 5,533,070 + BWI76_RS26720 0.49 -0.7 5,533,092 + BWI76_RS26720 0.52 -1.0 5,533,162 - BWI76_RS26720 0.62 +0.4 5,533,232 + -0.4 5,533,599 + -0.3 5,533,607 - -1.6 5,533,610 - +0.3 5,533,610 - -1.0 5,533,646 + -2.4 5,533,654 - +1.3 5,533,654 - +0.2 5,533,700 + BWI76_RS26725 0.14 +0.1 5,533,755 - BWI76_RS26725 0.20 -0.1 5,533,778 + BWI76_RS26725 0.23 -0.0 5,533,804 - BWI76_RS26725 0.26 +0.7 5,533,818 + BWI76_RS26725 0.27 -1.3 5,533,826 - BWI76_RS26725 0.28 +0.9 5,533,840 - BWI76_RS26725 0.30 +0.8 5,533,937 + BWI76_RS26725 0.40 -2.1 5,533,984 + BWI76_RS26725 0.46 -1.3 5,533,984 + BWI76_RS26725 0.46 -0.5 5,533,992 - BWI76_RS26725 0.47 +1.1 5,533,992 - BWI76_RS26725 0.47 +1.2 5,534,021 + BWI76_RS26725 0.50 +1.1 5,534,067 - BWI76_RS26725 0.55 -1.2 5,534,177 + BWI76_RS26725 0.67 +1.0 5,534,177 + BWI76_RS26725 0.67 +1.1 5,534,393 - -0.9 5,534,430 - +0.4 5,534,430 - +0.7 5,534,531 - +0.9 5,534,589 + +1.9 5,534,597 - -0.4 5,534,597 - -2.8 5,534,753 + -2.1 5,534,811 + -3.0 5,534,883 + BWI76_RS26730 0.16 -3.3 5,534,884 + +1.1 5,535,139 + BWI76_RS26730 0.40 -1.9 5,535,139 + BWI76_RS26730 0.40 -2.2 5,535,247 - BWI76_RS26730 0.51 -0.2 5,535,328 + BWI76_RS26730 0.59 -3.9 5,535,328 + BWI76_RS26730 0.59 +1.1 5,535,336 - BWI76_RS26730 0.59 -3.3 5,535,388 + BWI76_RS26730 0.64 -2.5 5,535,412 + BWI76_RS26730 0.67 +1.1
Or see this region's nucleotide sequence