Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22970

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22965 and BWI76_RS22970 overlap by 1 nucleotidesBWI76_RS22970 and BWI76_RS22975 are separated by 139 nucleotides BWI76_RS22965: BWI76_RS22965 - cysteine sulfinate desulfinase, at 4,794,415 to 4,795,620 _RS22965 BWI76_RS22970: BWI76_RS22970 - cysteine desulfurase, sulfur acceptor subunit CsdE, at 4,795,620 to 4,796,060 _RS22970 BWI76_RS22975: BWI76_RS22975 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 4,796,200 to 4,797,009 _RS22975 Position (kb) 4795 4796 4797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4794.714 kb on - strand, within BWI76_RS22965at 4794.807 kb on + strand, within BWI76_RS22965at 4794.823 kb on - strand, within BWI76_RS22965at 4794.904 kb on - strand, within BWI76_RS22965at 4795.425 kb on + strand, within BWI76_RS22965at 4795.485 kb on - strand, within BWI76_RS22965at 4795.627 kb on + strandat 4795.683 kb on - strand, within BWI76_RS22970at 4796.063 kb on - strandat 4796.075 kb on + strandat 4796.151 kb on + strandat 4796.421 kb on - strand, within BWI76_RS22975at 4796.438 kb on + strand, within BWI76_RS22975at 4796.649 kb on - strand, within BWI76_RS22975at 4796.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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4,794,714 - BWI76_RS22965 0.25 +1.5
4,794,807 + BWI76_RS22965 0.33 +0.2
4,794,823 - BWI76_RS22965 0.34 -1.0
4,794,904 - BWI76_RS22965 0.41 +0.9
4,795,425 + BWI76_RS22965 0.84 -0.5
4,795,485 - BWI76_RS22965 0.89 +1.5
4,795,627 + -0.1
4,795,683 - BWI76_RS22970 0.14 -1.0
4,796,063 - +2.4
4,796,075 + +0.5
4,796,151 + -4.4
4,796,421 - BWI76_RS22975 0.27 -0.1
4,796,438 + BWI76_RS22975 0.29 +2.1
4,796,649 - BWI76_RS22975 0.55 -1.4
4,796,985 + -0.1

Or see this region's nucleotide sequence