Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19215

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19210 and BWI76_RS19215 are separated by 84 nucleotidesBWI76_RS19215 and BWI76_RS19220 overlap by 29 nucleotides BWI76_RS19210: BWI76_RS19210 - LuxR family transcriptional regulator, at 3,998,342 to 3,999,094 _RS19210 BWI76_RS19215: BWI76_RS19215 - proline-specific peptidase, at 3,999,179 to 4,000,111 _RS19215 BWI76_RS19220: BWI76_RS19220 - hypothetical protein, at 4,000,083 to 4,001,201 _RS19220 Position (kb) 3999 4000 4001Strain fitness (log2 ratio) -1 0 1 2at 3998.542 kb on + strand, within BWI76_RS19210at 3998.740 kb on + strand, within BWI76_RS19210at 3998.879 kb on + strand, within BWI76_RS19210at 3999.134 kb on + strandat 3999.570 kb on - strand, within BWI76_RS19215at 4000.261 kb on + strand, within BWI76_RS19220at 4000.475 kb on + strand, within BWI76_RS19220at 4000.475 kb on + strand, within BWI76_RS19220at 4000.760 kb on - strand, within BWI76_RS19220at 4000.969 kb on + strand, within BWI76_RS19220at 4001.044 kb on + strand, within BWI76_RS19220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
remove
3,998,542 + BWI76_RS19210 0.27 +2.1
3,998,740 + BWI76_RS19210 0.53 -0.2
3,998,879 + BWI76_RS19210 0.71 +0.4
3,999,134 + -0.8
3,999,570 - BWI76_RS19215 0.42 +1.2
4,000,261 + BWI76_RS19220 0.16 +0.3
4,000,475 + BWI76_RS19220 0.35 -0.1
4,000,475 + BWI76_RS19220 0.35 -1.1
4,000,760 - BWI76_RS19220 0.61 -1.0
4,000,969 + BWI76_RS19220 0.79 +0.1
4,001,044 + BWI76_RS19220 0.86 +0.1

Or see this region's nucleotide sequence