Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08965 and BWI76_RS08970 overlap by 4 nucleotides BWI76_RS08970 and BWI76_RS08975 are separated by 134 nucleotides BWI76_RS08975 and BWI76_RS08980 are separated by 376 nucleotides
BWI76_RS08965: BWI76_RS08965 - glutamine ABC transporter ATP-binding protein, at 1,889,883 to 1,890,605
_RS08965
BWI76_RS08970: BWI76_RS08970 - glutamine ABC transporter permease GlnP, at 1,890,602 to 1,891,261
_RS08970
BWI76_RS08975: BWI76_RS08975 - amino acid ABC transporter substrate-binding protein, at 1,891,396 to 1,892,142
_RS08975
BWI76_RS08980: BWI76_RS08980 - DNA starvation/stationary phase protection protein, at 1,892,519 to 1,893,022
_RS08980
Position (kb)
1891
1892
1893 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1890.421 kb on - strand, within BWI76_RS08965 at 1890.461 kb on + strand, within BWI76_RS08965 at 1890.469 kb on - strand, within BWI76_RS08965 at 1890.474 kb on + strand, within BWI76_RS08965 at 1890.487 kb on - strand, within BWI76_RS08965 at 1890.645 kb on - strand at 1890.973 kb on - strand, within BWI76_RS08970 at 1891.266 kb on - strand at 1891.266 kb on - strand at 1891.275 kb on - strand at 1891.379 kb on - strand at 1891.499 kb on - strand, within BWI76_RS08975 at 1891.553 kb on + strand, within BWI76_RS08975 at 1891.944 kb on + strand, within BWI76_RS08975 at 1891.981 kb on + strand, within BWI76_RS08975 at 1891.994 kb on - strand, within BWI76_RS08975 at 1892.126 kb on - strand at 1892.145 kb on - strand at 1892.167 kb on + strand at 1892.167 kb on + strand at 1892.449 kb on + strand at 1892.457 kb on - strand at 1892.524 kb on - strand at 1892.683 kb on - strand, within BWI76_RS08980 at 1893.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 1,890,421 - BWI76_RS08965 0.74 -0.5 1,890,461 + BWI76_RS08965 0.80 +0.3 1,890,469 - BWI76_RS08965 0.81 +0.7 1,890,474 + BWI76_RS08965 0.82 -0.5 1,890,487 - BWI76_RS08965 0.84 -0.0 1,890,645 - -2.2 1,890,973 - BWI76_RS08970 0.56 +0.0 1,891,266 - -0.4 1,891,266 - -0.1 1,891,275 - -1.9 1,891,379 - +1.8 1,891,499 - BWI76_RS08975 0.14 -1.0 1,891,553 + BWI76_RS08975 0.21 -0.7 1,891,944 + BWI76_RS08975 0.73 +1.0 1,891,981 + BWI76_RS08975 0.78 -1.4 1,891,994 - BWI76_RS08975 0.80 +1.0 1,892,126 - +0.1 1,892,145 - +0.2 1,892,167 + -0.2 1,892,167 + -1.6 1,892,449 + -0.9 1,892,457 - +1.2 1,892,524 - -2.5 1,892,683 - BWI76_RS08980 0.33 -0.5 1,893,108 + -0.1
Or see this region's nucleotide sequence