Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08485

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08480 and BWI76_RS08485 are separated by 16 nucleotidesBWI76_RS08485 and BWI76_RS08490 overlap by 1 nucleotides BWI76_RS08480: BWI76_RS08480 - methylaspartate mutase subunit E, at 1,795,580 to 1,797,025 _RS08480 BWI76_RS08485: BWI76_RS08485 - glutamate mutase, at 1,797,042 to 1,798,430 _RS08485 BWI76_RS08490: BWI76_RS08490 - methylaspartate mutase, at 1,798,430 to 1,798,879 _RS08490 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1796.394 kb on - strand, within BWI76_RS08480at 1796.789 kb on - strand, within BWI76_RS08480at 1796.789 kb on - strand, within BWI76_RS08480at 1796.847 kb on - strand, within BWI76_RS08480at 1796.859 kb on + strand, within BWI76_RS08480at 1796.867 kb on - strand, within BWI76_RS08480at 1796.867 kb on - strand, within BWI76_RS08480at 1796.867 kb on - strand, within BWI76_RS08480at 1796.975 kb on - strandat 1797.024 kb on + strandat 1797.057 kb on + strandat 1797.080 kb on + strandat 1797.085 kb on + strandat 1797.085 kb on + strandat 1797.207 kb on + strand, within BWI76_RS08485at 1797.315 kb on + strand, within BWI76_RS08485at 1797.912 kb on + strand, within BWI76_RS08485at 1798.009 kb on - strand, within BWI76_RS08485at 1798.011 kb on + strand, within BWI76_RS08485at 1798.110 kb on - strand, within BWI76_RS08485at 1798.283 kb on + strand, within BWI76_RS08485at 1798.345 kb on - strandat 1798.363 kb on + strandat 1798.363 kb on + strandat 1798.371 kb on - strandat 1798.435 kb on - strandat 1798.451 kb on + strandat 1798.456 kb on + strandat 1798.612 kb on + strand, within BWI76_RS08490at 1798.619 kb on - strand, within BWI76_RS08490at 1798.629 kb on - strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.660 kb on + strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.668 kb on - strand, within BWI76_RS08490at 1798.693 kb on - strand, within BWI76_RS08490at 1798.705 kb on - strand, within BWI76_RS08490at 1798.710 kb on - strand, within BWI76_RS08490at 1798.747 kb on - strand, within BWI76_RS08490at 1798.771 kb on + strand, within BWI76_RS08490at 1798.773 kb on - strand, within BWI76_RS08490at 1798.795 kb on - strand, within BWI76_RS08490at 1798.816 kb on - strand, within BWI76_RS08490at 1798.820 kb on + strand, within BWI76_RS08490at 1798.821 kb on - strand, within BWI76_RS08490at 1798.828 kb on + strand, within BWI76_RS08490at 1798.830 kb on + strand, within BWI76_RS08490at 1798.836 kb on - strandat 1798.836 kb on - strandat 1798.838 kb on - strandat 1798.838 kb on - strandat 1798.845 kb on - strandat 1798.888 kb on - strandat 1798.888 kb on - strandat 1798.890 kb on + strandat 1798.895 kb on - strandat 1798.898 kb on - strandat 1798.898 kb on - strandat 1798.937 kb on + strandat 1798.953 kb on + strandat 1798.961 kb on - strandat 1798.963 kb on + strandat 1798.963 kb on + strandat 1798.971 kb on - strandat 1798.971 kb on - strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.356 kb on + strandat 1799.363 kb on - strandat 1799.364 kb on - strandat 1799.364 kb on - strandat 1799.378 kb on - strandat 1799.385 kb on + strandat 1799.385 kb on + strandat 1799.391 kb on - strandat 1799.395 kb on - strandat 1799.402 kb on + strandat 1799.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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1,796,394 - BWI76_RS08480 0.56 -0.5
1,796,789 - BWI76_RS08480 0.84 -3.3
1,796,789 - BWI76_RS08480 0.84 +1.9
1,796,847 - BWI76_RS08480 0.88 -0.5
1,796,859 + BWI76_RS08480 0.88 +0.4
1,796,867 - BWI76_RS08480 0.89 -0.7
1,796,867 - BWI76_RS08480 0.89 -0.3
1,796,867 - BWI76_RS08480 0.89 +0.5
1,796,975 - +0.6
1,797,024 + -2.9
1,797,057 + -0.0
1,797,080 + -0.1
1,797,085 + +0.7
1,797,085 + +0.6
1,797,207 + BWI76_RS08485 0.12 +0.1
1,797,315 + BWI76_RS08485 0.20 +1.0
1,797,912 + BWI76_RS08485 0.63 +0.2
1,798,009 - BWI76_RS08485 0.70 -1.4
1,798,011 + BWI76_RS08485 0.70 +0.0
1,798,110 - BWI76_RS08485 0.77 +0.3
1,798,283 + BWI76_RS08485 0.89 -1.6
1,798,345 - -2.4
1,798,363 + -0.5
1,798,363 + -0.1
1,798,371 - -1.1
1,798,435 - +0.1
1,798,451 + +0.7
1,798,456 + -0.1
1,798,612 + BWI76_RS08490 0.40 +1.2
1,798,619 - BWI76_RS08490 0.42 -3.1
1,798,629 - BWI76_RS08490 0.44 +0.8
1,798,660 + BWI76_RS08490 0.51 -0.9
1,798,660 + BWI76_RS08490 0.51 -0.1
1,798,660 + BWI76_RS08490 0.51 +1.9
1,798,660 + BWI76_RS08490 0.51 -0.4
1,798,660 + BWI76_RS08490 0.51 +1.0
1,798,660 + BWI76_RS08490 0.51 +0.1
1,798,660 + BWI76_RS08490 0.51 -3.0
1,798,660 + BWI76_RS08490 0.51 -3.2
1,798,660 + BWI76_RS08490 0.51 -0.8
1,798,668 - BWI76_RS08490 0.53 -0.3
1,798,668 - BWI76_RS08490 0.53 +0.5
1,798,668 - BWI76_RS08490 0.53 -1.6
1,798,668 - BWI76_RS08490 0.53 -0.0
1,798,668 - BWI76_RS08490 0.53 +1.1
1,798,668 - BWI76_RS08490 0.53 -2.7
1,798,668 - BWI76_RS08490 0.53 -0.7
1,798,693 - BWI76_RS08490 0.58 +0.2
1,798,705 - BWI76_RS08490 0.61 +0.4
1,798,710 - BWI76_RS08490 0.62 -1.9
1,798,747 - BWI76_RS08490 0.70 +0.8
1,798,771 + BWI76_RS08490 0.76 -2.5
1,798,773 - BWI76_RS08490 0.76 -0.1
1,798,795 - BWI76_RS08490 0.81 +0.1
1,798,816 - BWI76_RS08490 0.86 -1.2
1,798,820 + BWI76_RS08490 0.87 +1.0
1,798,821 - BWI76_RS08490 0.87 -1.0
1,798,828 + BWI76_RS08490 0.88 -2.7
1,798,830 + BWI76_RS08490 0.89 -0.5
1,798,836 - -0.8
1,798,836 - +1.8
1,798,838 - +0.7
1,798,838 - -0.8
1,798,845 - -2.4
1,798,888 - -0.0
1,798,888 - -1.5
1,798,890 + -2.6
1,798,895 - +0.9
1,798,898 - +0.9
1,798,898 - +0.0
1,798,937 + -0.6
1,798,953 + -1.6
1,798,961 - -0.4
1,798,963 + -0.7
1,798,963 + -1.4
1,798,971 - -0.3
1,798,971 - -0.9
1,799,341 + +0.8
1,799,341 + -0.2
1,799,341 + -2.5
1,799,341 + -1.4
1,799,341 + -2.4
1,799,341 + -1.1
1,799,356 + -0.1
1,799,363 - -2.5
1,799,364 - +0.8
1,799,364 - +0.6
1,799,378 - +3.2
1,799,385 + -0.1
1,799,385 + -0.6
1,799,391 - -2.4
1,799,395 - -3.6
1,799,402 + +0.3
1,799,403 - -0.9

Or see this region's nucleotide sequence