Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07670

Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07665 and BWI76_RS07670 are separated by 133 nucleotidesBWI76_RS07670 and BWI76_RS07675 are separated by 363 nucleotides BWI76_RS07665: BWI76_RS07665 - ABC transporter substrate-binding protein, at 1,623,071 to 1,624,006 _RS07665 BWI76_RS07670: BWI76_RS07670 - carbohydrate kinase, at 1,624,140 to 1,625,660 _RS07670 BWI76_RS07675: BWI76_RS07675 - DeoR family transcriptional regulator, at 1,626,024 to 1,626,974 _RS07675 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1623.207 kb on + strand, within BWI76_RS07665at 1623.215 kb on - strand, within BWI76_RS07665at 1623.288 kb on + strand, within BWI76_RS07665at 1623.306 kb on - strand, within BWI76_RS07665at 1623.397 kb on + strand, within BWI76_RS07665at 1623.397 kb on + strand, within BWI76_RS07665at 1623.405 kb on - strand, within BWI76_RS07665at 1623.405 kb on - strand, within BWI76_RS07665at 1623.451 kb on + strand, within BWI76_RS07665at 1623.459 kb on - strand, within BWI76_RS07665at 1623.464 kb on + strand, within BWI76_RS07665at 1623.464 kb on + strand, within BWI76_RS07665at 1623.464 kb on + strand, within BWI76_RS07665at 1623.464 kb on + strand, within BWI76_RS07665at 1623.464 kb on + strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.472 kb on - strand, within BWI76_RS07665at 1623.510 kb on - strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.521 kb on + strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.529 kb on - strand, within BWI76_RS07665at 1623.535 kb on + strand, within BWI76_RS07665at 1623.543 kb on - strand, within BWI76_RS07665at 1623.606 kb on - strand, within BWI76_RS07665at 1623.671 kb on + strand, within BWI76_RS07665at 1623.726 kb on + strand, within BWI76_RS07665at 1623.734 kb on - strand, within BWI76_RS07665at 1623.746 kb on - strand, within BWI76_RS07665at 1623.746 kb on - strand, within BWI76_RS07665at 1623.746 kb on - strand, within BWI76_RS07665at 1623.746 kb on - strandat 1623.751 kb on - strand, within BWI76_RS07665at 1623.756 kb on - strand, within BWI76_RS07665at 1623.756 kb on - strand, within BWI76_RS07665at 1623.870 kb on + strand, within BWI76_RS07665at 1623.894 kb on + strand, within BWI76_RS07665at 1623.894 kb on + strand, within BWI76_RS07665at 1623.919 kb on + strandat 1623.949 kb on - strandat 1623.970 kb on + strandat 1623.970 kb on + strandat 1623.970 kb on + strandat 1623.978 kb on - strandat 1623.978 kb on - strandat 1623.978 kb on - strandat 1623.978 kb on - strandat 1624.041 kb on - strandat 1624.052 kb on + strandat 1624.110 kb on - strandat 1624.168 kb on + strandat 1624.176 kb on - strandat 1624.176 kb on - strandat 1624.181 kb on - strandat 1624.321 kb on - strand, within BWI76_RS07670at 1624.334 kb on + strand, within BWI76_RS07670at 1624.355 kb on + strand, within BWI76_RS07670at 1624.378 kb on + strand, within BWI76_RS07670at 1624.378 kb on + strand, within BWI76_RS07670at 1624.386 kb on - strand, within BWI76_RS07670at 1624.386 kb on - strand, within BWI76_RS07670at 1624.396 kb on - strand, within BWI76_RS07670at 1624.396 kb on - strand, within BWI76_RS07670at 1624.697 kb on + strand, within BWI76_RS07670at 1624.932 kb on - strand, within BWI76_RS07670at 1625.003 kb on + strand, within BWI76_RS07670at 1625.010 kb on - strand, within BWI76_RS07670at 1625.165 kb on - strand, within BWI76_RS07670at 1625.253 kb on - strand, within BWI76_RS07670at 1625.289 kb on - strand, within BWI76_RS07670at 1625.305 kb on - strand, within BWI76_RS07670at 1625.501 kb on - strand, within BWI76_RS07670at 1625.503 kb on + strand, within BWI76_RS07670at 1625.740 kb on - strandat 1625.883 kb on - strandat 1626.201 kb on + strand, within BWI76_RS07675at 1626.433 kb on - strand, within BWI76_RS07675at 1626.445 kb on - strand, within BWI76_RS07675

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
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1,623,207 + BWI76_RS07665 0.15 +0.1
1,623,215 - BWI76_RS07665 0.15 -0.1
1,623,288 + BWI76_RS07665 0.23 +0.6
1,623,306 - BWI76_RS07665 0.25 -0.4
1,623,397 + BWI76_RS07665 0.35 -0.3
1,623,397 + BWI76_RS07665 0.35 -2.1
1,623,405 - BWI76_RS07665 0.36 -3.1
1,623,405 - BWI76_RS07665 0.36 +1.2
1,623,451 + BWI76_RS07665 0.41 +0.9
1,623,459 - BWI76_RS07665 0.41 -0.6
1,623,464 + BWI76_RS07665 0.42 -1.2
1,623,464 + BWI76_RS07665 0.42 -0.5
1,623,464 + BWI76_RS07665 0.42 -1.6
1,623,464 + BWI76_RS07665 0.42 -1.4
1,623,464 + BWI76_RS07665 0.42 -2.1
1,623,472 - BWI76_RS07665 0.43 +0.3
1,623,472 - BWI76_RS07665 0.43 +0.4
1,623,472 - BWI76_RS07665 0.43 +0.8
1,623,472 - BWI76_RS07665 0.43 +1.3
1,623,472 - BWI76_RS07665 0.43 -0.3
1,623,472 - BWI76_RS07665 0.43 +0.2
1,623,472 - BWI76_RS07665 0.43 -0.1
1,623,472 - BWI76_RS07665 0.43 +0.1
1,623,472 - BWI76_RS07665 0.43 -0.6
1,623,510 - BWI76_RS07665 0.47 -0.1
1,623,521 + BWI76_RS07665 0.48 +0.4
1,623,521 + BWI76_RS07665 0.48 -2.6
1,623,521 + BWI76_RS07665 0.48 +0.9
1,623,521 + BWI76_RS07665 0.48 -1.6
1,623,521 + BWI76_RS07665 0.48 -0.3
1,623,521 + BWI76_RS07665 0.48 +0.4
1,623,521 + BWI76_RS07665 0.48 +0.3
1,623,521 + BWI76_RS07665 0.48 +0.5
1,623,521 + BWI76_RS07665 0.48 +0.1
1,623,529 - BWI76_RS07665 0.49 -0.3
1,623,529 - BWI76_RS07665 0.49 +0.7
1,623,529 - BWI76_RS07665 0.49 +0.1
1,623,529 - BWI76_RS07665 0.49 -0.2
1,623,529 - BWI76_RS07665 0.49 -0.7
1,623,529 - BWI76_RS07665 0.49 -0.1
1,623,529 - BWI76_RS07665 0.49 -3.6
1,623,535 + BWI76_RS07665 0.50 -1.1
1,623,543 - BWI76_RS07665 0.50 +0.8
1,623,606 - BWI76_RS07665 0.57 +1.9
1,623,671 + BWI76_RS07665 0.64 +1.2
1,623,726 + BWI76_RS07665 0.70 -0.6
1,623,734 - BWI76_RS07665 0.71 -0.1
1,623,746 - BWI76_RS07665 0.72 -0.5
1,623,746 - BWI76_RS07665 0.72 -1.1
1,623,746 - BWI76_RS07665 0.72 -1.7
1,623,746 - +0.9
1,623,751 - BWI76_RS07665 0.73 -2.2
1,623,756 - BWI76_RS07665 0.73 -0.9
1,623,756 - BWI76_RS07665 0.73 +0.5
1,623,870 + BWI76_RS07665 0.85 -1.0
1,623,894 + BWI76_RS07665 0.88 -1.1
1,623,894 + BWI76_RS07665 0.88 -2.1
1,623,919 + -0.8
1,623,949 - +0.2
1,623,970 + -1.1
1,623,970 + -0.0
1,623,970 + +0.6
1,623,978 - -0.8
1,623,978 - -0.7
1,623,978 - -3.6
1,623,978 - -1.2
1,624,041 - +0.5
1,624,052 + +1.0
1,624,110 - +0.6
1,624,168 + +0.4
1,624,176 - -0.1
1,624,176 - +0.9
1,624,181 - +1.0
1,624,321 - BWI76_RS07670 0.12 -0.7
1,624,334 + BWI76_RS07670 0.13 -2.2
1,624,355 + BWI76_RS07670 0.14 -0.6
1,624,378 + BWI76_RS07670 0.16 +0.1
1,624,378 + BWI76_RS07670 0.16 -0.9
1,624,386 - BWI76_RS07670 0.16 -0.5
1,624,386 - BWI76_RS07670 0.16 -0.7
1,624,396 - BWI76_RS07670 0.17 -0.6
1,624,396 - BWI76_RS07670 0.17 -2.2
1,624,697 + BWI76_RS07670 0.37 +0.9
1,624,932 - BWI76_RS07670 0.52 +0.6
1,625,003 + BWI76_RS07670 0.57 -0.6
1,625,010 - BWI76_RS07670 0.57 +0.7
1,625,165 - BWI76_RS07670 0.67 -3.2
1,625,253 - BWI76_RS07670 0.73 +0.4
1,625,289 - BWI76_RS07670 0.76 -1.6
1,625,305 - BWI76_RS07670 0.77 +0.1
1,625,501 - BWI76_RS07670 0.89 -2.4
1,625,503 + BWI76_RS07670 0.90 -1.6
1,625,740 - +0.2
1,625,883 - +1.1
1,626,201 + BWI76_RS07675 0.19 -1.6
1,626,433 - BWI76_RS07675 0.43 -0.9
1,626,445 - BWI76_RS07675 0.44 +0.2

Or see this region's nucleotide sequence