Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06435 and BWI76_RS06440 are separated by 10 nucleotides BWI76_RS06440 and BWI76_RS06445 are separated by 65 nucleotides BWI76_RS06445 and BWI76_RS06450 are separated by 10 nucleotides BWI76_RS06450 and BWI76_RS06455 are separated by 13 nucleotides
BWI76_RS06435: BWI76_RS06435 - MFS transporter, at 1,352,150 to 1,353,514
_RS06435
BWI76_RS06440: BWI76_RS06440 - AP endonuclease, at 1,353,525 to 1,354,343
_RS06440
BWI76_RS06445: BWI76_RS06445 - FAD-dependent oxidoreductase, at 1,354,409 to 1,356,112
_RS06445
BWI76_RS06450: BWI76_RS06450 - NIPSNAP family protein, at 1,356,123 to 1,356,443
_RS06450
BWI76_RS06455: BWI76_RS06455 - 3-oxosteroid 1-dehydrogenase, at 1,356,457 to 1,358,133
_RS06455
Position (kb) 1354
1355
1356
1357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1353.498 kb on - strand at 1354.045 kb on + strand, within BWI76_RS06440 at 1354.360 kb on + strand at 1354.614 kb on + strand, within BWI76_RS06445 at 1354.718 kb on + strand, within BWI76_RS06445 at 1354.869 kb on + strand, within BWI76_RS06445 at 1354.882 kb on + strand, within BWI76_RS06445 at 1354.882 kb on + strand, within BWI76_RS06445 at 1354.925 kb on + strand, within BWI76_RS06445 at 1355.069 kb on - strand, within BWI76_RS06445 at 1355.225 kb on - strand, within BWI76_RS06445 at 1355.316 kb on - strand, within BWI76_RS06445 at 1355.841 kb on - strand, within BWI76_RS06445 at 1356.277 kb on + strand, within BWI76_RS06450 at 1356.282 kb on + strand, within BWI76_RS06450 at 1356.418 kb on + strand at 1356.506 kb on - strand at 1356.552 kb on - strand at 1356.552 kb on - strand at 1356.591 kb on - strand at 1356.647 kb on - strand, within BWI76_RS06455 at 1356.678 kb on + strand, within BWI76_RS06455 at 1356.806 kb on + strand, within BWI76_RS06455
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 1,353,498 - +0.8 1,354,045 + BWI76_RS06440 0.63 +0.3 1,354,360 + -0.7 1,354,614 + BWI76_RS06445 0.12 +0.3 1,354,718 + BWI76_RS06445 0.18 +0.2 1,354,869 + BWI76_RS06445 0.27 -0.5 1,354,882 + BWI76_RS06445 0.28 +0.5 1,354,882 + BWI76_RS06445 0.28 +0.2 1,354,925 + BWI76_RS06445 0.30 -0.1 1,355,069 - BWI76_RS06445 0.39 +0.7 1,355,225 - BWI76_RS06445 0.48 +1.0 1,355,316 - BWI76_RS06445 0.53 +1.1 1,355,841 - BWI76_RS06445 0.84 -1.7 1,356,277 + BWI76_RS06450 0.48 +1.9 1,356,282 + BWI76_RS06450 0.50 -2.1 1,356,418 + +0.8 1,356,506 - -0.1 1,356,552 - -0.1 1,356,552 - +0.7 1,356,591 - -1.8 1,356,647 - BWI76_RS06455 0.11 -0.1 1,356,678 + BWI76_RS06455 0.13 -0.6 1,356,806 + BWI76_RS06455 0.21 +0.0
Or see this region's nucleotide sequence