Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06355 and BWI76_RS06360 are separated by 19 nucleotides BWI76_RS06360 and BWI76_RS06365 are separated by 75 nucleotides BWI76_RS06365 and BWI76_RS06370 overlap by 14 nucleotides BWI76_RS06370 and BWI76_RS06375 are separated by 289 nucleotides
BWI76_RS06355: BWI76_RS06355 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,336,829 to 1,337,299
_RS06355
BWI76_RS06360: BWI76_RS06360 - N utilization substance protein B, at 1,337,319 to 1,337,738
_RS06360
BWI76_RS06365: BWI76_RS06365 - thiamine-monophosphate kinase, at 1,337,814 to 1,338,791
_RS06365
BWI76_RS06370: BWI76_RS06370 - phosphatidylglycerophosphatase A, at 1,338,778 to 1,339,284
_RS06370
BWI76_RS06375: BWI76_RS06375 - oxidoreductase, at 1,339,574 to 1,340,548
_RS06375
Position (kb)
1337
1338
1339 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1338.855 kb on - strand, within BWI76_RS06370 at 1338.982 kb on - strand, within BWI76_RS06370 at 1339.011 kb on - strand, within BWI76_RS06370 at 1339.050 kb on + strand, within BWI76_RS06370 at 1339.222 kb on + strand, within BWI76_RS06370 at 1339.255 kb on + strand at 1339.260 kb on + strand at 1339.398 kb on - strand at 1339.404 kb on - strand at 1339.426 kb on + strand at 1339.523 kb on - strand at 1339.611 kb on + strand at 1339.630 kb on + strand at 1339.718 kb on + strand, within BWI76_RS06375 at 1339.739 kb on - strand, within BWI76_RS06375
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 1,338,855 - BWI76_RS06370 0.15 -2.3 1,338,982 - BWI76_RS06370 0.40 -1.2 1,339,011 - BWI76_RS06370 0.46 +1.8 1,339,050 + BWI76_RS06370 0.54 -1.1 1,339,222 + BWI76_RS06370 0.88 -0.9 1,339,255 + +0.3 1,339,260 + -0.8 1,339,398 - -0.4 1,339,404 - +0.6 1,339,426 + +0.2 1,339,523 - -1.2 1,339,611 + -0.7 1,339,630 + -0.9 1,339,718 + BWI76_RS06375 0.15 -2.3 1,339,739 - BWI76_RS06375 0.17 +0.0
Or see this region's nucleotide sequence