Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25040 and AO356_25045 overlap by 26 nucleotides AO356_25045 and AO356_25050 overlap by 8 nucleotides AO356_25050 and AO356_25055 overlap by 4 nucleotides AO356_25055 and AO356_25060 are separated by 2 nucleotides
AO356_25040: AO356_25040 - nitrite reductase, at 5,673,848 to 5,674,417
_25040
AO356_25045: AO356_25045 - protein nirG, at 5,674,392 to 5,674,835
_25045
AO356_25050: AO356_25050 - protein nirL, at 5,674,828 to 5,675,340
_25050
AO356_25055: AO356_25055 - AsnC family transcriptional regulator, at 5,675,337 to 5,675,795
_25055
AO356_25060: AO356_25060 - protein nirF, at 5,675,798 to 5,676,976
_25060
Position (kb) 5675
5676 Strain fitness (log2 ratio) -2
-1
0
1 at 5674.405 kb on + strand at 5674.406 kb on - strand at 5674.406 kb on - strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.421 kb on - strand at 5674.421 kb on - strand at 5674.552 kb on + strand, within AO356_25045 at 5674.553 kb on - strand, within AO356_25045 at 5674.689 kb on + strand, within AO356_25045 at 5674.689 kb on + strand, within AO356_25045 at 5674.903 kb on + strand, within AO356_25050 at 5674.904 kb on - strand, within AO356_25050 at 5674.904 kb on - strand, within AO356_25050 at 5675.006 kb on + strand, within AO356_25050 at 5675.006 kb on + strand, within AO356_25050 at 5675.006 kb on + strand, within AO356_25050 at 5675.006 kb on + strand, within AO356_25050 at 5675.007 kb on - strand, within AO356_25050 at 5675.007 kb on - strand, within AO356_25050 at 5675.007 kb on - strand, within AO356_25050 at 5675.491 kb on + strand, within AO356_25055 at 5675.491 kb on + strand, within AO356_25055 at 5675.491 kb on + strand, within AO356_25055 at 5675.509 kb on + strand, within AO356_25055 at 5675.509 kb on + strand, within AO356_25055 at 5675.510 kb on - strand, within AO356_25055 at 5675.641 kb on - strand, within AO356_25055 at 5675.723 kb on - strand, within AO356_25055 at 5676.234 kb on + strand, within AO356_25060 at 5676.234 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 5,674,405 + -0.4 5,674,406 - -0.1 5,674,406 - -0.6 5,674,420 + -0.7 5,674,420 + +0.3 5,674,420 + -1.6 5,674,420 + -0.1 5,674,420 + +1.2 5,674,420 + +0.1 5,674,421 - -0.0 5,674,421 - +0.0 5,674,552 + AO356_25045 0.36 -1.3 5,674,553 - AO356_25045 0.36 +0.4 5,674,689 + AO356_25045 0.67 -1.1 5,674,689 + AO356_25045 0.67 +0.6 5,674,903 + AO356_25050 0.15 +0.6 5,674,904 - AO356_25050 0.15 +0.9 5,674,904 - AO356_25050 0.15 +1.1 5,675,006 + AO356_25050 0.35 -0.2 5,675,006 + AO356_25050 0.35 +0.3 5,675,006 + AO356_25050 0.35 -0.1 5,675,006 + AO356_25050 0.35 +0.3 5,675,007 - AO356_25050 0.35 +0.4 5,675,007 - AO356_25050 0.35 +0.8 5,675,007 - AO356_25050 0.35 +1.1 5,675,491 + AO356_25055 0.34 +0.5 5,675,491 + AO356_25055 0.34 +0.1 5,675,491 + AO356_25055 0.34 -0.0 5,675,509 + AO356_25055 0.37 -2.1 5,675,509 + AO356_25055 0.37 -0.7 5,675,510 - AO356_25055 0.38 +1.0 5,675,641 - AO356_25055 0.66 -0.5 5,675,723 - AO356_25055 0.84 -0.8 5,676,234 + AO356_25060 0.37 -0.3 5,676,234 + AO356_25060 0.37 +0.0 5,676,351 + AO356_25060 0.47 -0.3 5,676,351 + AO356_25060 0.47 +0.3 5,676,351 + AO356_25060 0.47 -0.0 5,676,351 + AO356_25060 0.47 +0.4 5,676,351 + AO356_25060 0.47 -0.9 5,676,351 + AO356_25060 0.47 +0.7 5,676,352 - AO356_25060 0.47 -0.2 5,676,352 - AO356_25060 0.47 +1.0 5,676,352 - AO356_25060 0.47 -0.5 5,676,352 - AO356_25060 0.47 +0.5 5,676,352 - AO356_25060 0.47 -0.2
Or see this region's nucleotide sequence