Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09345 and AO356_09350 are separated by 8 nucleotides AO356_09350 and AO356_09355 overlap by 4 nucleotides AO356_09355 and AO356_09360 are separated by 66 nucleotides
AO356_09345: AO356_09345 - type II secretion system protein GspD, at 2,111,468 to 2,113,393
_09345
AO356_09350: AO356_09350 - hypothetical protein, at 2,113,402 to 2,113,929
_09350
AO356_09355: AO356_09355 - cytochrome B, at 2,113,926 to 2,114,468
_09355
AO356_09360: AO356_09360 - multidrug transporter, at 2,114,535 to 2,116,001
_09360
Position (kb)
2113
2114 Strain fitness (log2 ratio)
-1
0
1 at 2112.530 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.890 kb on + strand, within AO356_09345 at 2112.891 kb on - strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.925 kb on - strand, within AO356_09345 at 2113.134 kb on + strand, within AO356_09345 at 2113.134 kb on + strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.429 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.611 kb on - strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.988 kb on + strand, within AO356_09355 at 2113.989 kb on - strand, within AO356_09355 at 2113.989 kb on - strand, within AO356_09355 at 2114.197 kb on + strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.455 kb on + strand at 2114.455 kb on + strand at 2114.455 kb on + strand at 2114.456 kb on - strand at 2114.456 kb on - strand at 2114.462 kb on + strand at 2114.463 kb on - strand at 2114.463 kb on - strand at 2114.463 kb on - strand at 2114.536 kb on + strand at 2114.536 kb on + strand at 2114.536 kb on + strand at 2114.536 kb on + strand at 2114.536 kb on + strand at 2114.537 kb on - strand at 2114.537 kb on - strand at 2114.605 kb on + strand at 2114.605 kb on + strand at 2114.605 kb on + strand at 2114.605 kb on + strand at 2114.605 kb on + strand at 2114.605 kb on + strand at 2114.606 kb on - strand at 2114.606 kb on - strand at 2114.606 kb on - strand at 2114.693 kb on - strand, within AO356_09360 at 2114.725 kb on + strand, within AO356_09360 at 2114.725 kb on + strand, within AO356_09360 at 2114.726 kb on - strand, within AO356_09360 at 2114.736 kb on + strand, within AO356_09360 at 2114.737 kb on - strand, within AO356_09360 at 2114.783 kb on + strand, within AO356_09360 at 2114.793 kb on + strand, within AO356_09360 at 2114.794 kb on - strand, within AO356_09360 at 2114.794 kb on - strand, within AO356_09360
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 2,112,530 - AO356_09345 0.55 -0.4 2,112,552 - AO356_09345 0.56 +0.2 2,112,552 - AO356_09345 0.56 -0.5 2,112,552 - AO356_09345 0.56 -1.2 2,112,552 - AO356_09345 0.56 -0.2 2,112,890 + AO356_09345 0.74 +0.2 2,112,891 - AO356_09345 0.74 +0.3 2,112,924 + AO356_09345 0.76 -0.0 2,112,924 + AO356_09345 0.76 -0.1 2,112,924 + AO356_09345 0.76 +1.0 2,112,925 - AO356_09345 0.76 +1.1 2,113,134 + AO356_09345 0.87 +0.8 2,113,134 + AO356_09345 0.87 +0.1 2,113,135 - AO356_09345 0.87 +0.7 2,113,135 - AO356_09345 0.87 +0.2 2,113,135 - AO356_09345 0.87 +0.4 2,113,429 + -0.7 2,113,433 + +1.4 2,113,433 + +0.7 2,113,433 + +0.4 2,113,433 + +0.4 2,113,433 + -0.8 2,113,434 - +0.1 2,113,434 - -0.5 2,113,434 - +0.1 2,113,434 - -0.8 2,113,434 - +0.0 2,113,434 - +0.4 2,113,434 - +0.7 2,113,611 - AO356_09350 0.40 -0.6 2,113,862 + AO356_09350 0.87 -0.4 2,113,862 + AO356_09350 0.87 -0.5 2,113,862 + AO356_09350 0.87 +0.1 2,113,988 + AO356_09355 0.11 +0.6 2,113,989 - AO356_09355 0.12 -0.7 2,113,989 - AO356_09355 0.12 +0.3 2,114,197 + AO356_09355 0.50 +0.4 2,114,198 - AO356_09355 0.50 -0.8 2,114,198 - AO356_09355 0.50 +0.1 2,114,198 - AO356_09355 0.50 +0.4 2,114,455 + +0.8 2,114,455 + -0.2 2,114,455 + +0.1 2,114,456 - +0.9 2,114,456 - +1.0 2,114,462 + +0.4 2,114,463 - +0.6 2,114,463 - +0.5 2,114,463 - -0.1 2,114,536 + +0.5 2,114,536 + -0.1 2,114,536 + +0.4 2,114,536 + +0.4 2,114,536 + -1.0 2,114,537 - +0.6 2,114,537 - +0.9 2,114,605 + -0.5 2,114,605 + +0.1 2,114,605 + -0.3 2,114,605 + +0.1 2,114,605 + +0.2 2,114,605 + -1.2 2,114,606 - +0.1 2,114,606 - +1.7 2,114,606 - -0.9 2,114,693 - AO356_09360 0.11 -0.1 2,114,725 + AO356_09360 0.13 +0.9 2,114,725 + AO356_09360 0.13 +0.9 2,114,726 - AO356_09360 0.13 -0.4 2,114,736 + AO356_09360 0.14 -0.1 2,114,737 - AO356_09360 0.14 +0.5 2,114,783 + AO356_09360 0.17 +0.3 2,114,793 + AO356_09360 0.18 -0.6 2,114,794 - AO356_09360 0.18 -0.2 2,114,794 - AO356_09360 0.18 -1.4
Or see this region's nucleotide sequence