Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01420

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01405 and AO356_01410 are separated by 212 nucleotidesAO356_01410 and AO356_01415 are separated by 5 nucleotidesAO356_01415 and AO356_01420 are separated by 2 nucleotidesAO356_01420 and AO356_01425 are separated by 113 nucleotides AO356_01405: AO356_01405 - purine nucleoside permease, at 324,254 to 325,279 _01405 AO356_01410: AO356_01410 - hypothetical protein, at 325,492 to 325,776 _01410 AO356_01415: AO356_01415 - hypothetical protein, at 325,782 to 326,234 _01415 AO356_01420: AO356_01420 - hypothetical protein, at 326,237 to 326,734 _01420 AO356_01425: AO356_01425 - LysR family transcriptional regulator, at 326,848 to 327,780 _01425 Position (kb) 326 327Strain fitness (log2 ratio) -1 0 1 2at 325.534 kb on + strand, within AO356_01410at 325.619 kb on + strand, within AO356_01410at 325.807 kb on + strandat 325.808 kb on - strandat 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 326.436 kb on + strand, within AO356_01420at 326.436 kb on + strand, within AO356_01420at 326.436 kb on + strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.658 kb on - strand, within AO356_01420at 326.658 kb on - strand, within AO356_01420at 326.661 kb on - strand, within AO356_01420at 327.203 kb on + strand, within AO356_01425at 327.203 kb on + strand, within AO356_01425at 327.204 kb on - strand, within AO356_01425at 327.253 kb on + strand, within AO356_01425at 327.254 kb on - strand, within AO356_01425at 327.374 kb on - strand, within AO356_01425at 327.436 kb on + strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.437 kb on - strand, within AO356_01425at 327.499 kb on + strand, within AO356_01425at 327.644 kb on - strand, within AO356_01425

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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325,534 + AO356_01410 0.15 -0.3
325,619 + AO356_01410 0.45 -0.2
325,807 + +0.1
325,808 - +1.4
325,996 + AO356_01415 0.47 +2.5
325,996 + AO356_01415 0.47 +0.7
325,996 + AO356_01415 0.47 +0.4
325,996 + AO356_01415 0.47 -0.5
325,996 + AO356_01415 0.47 -0.3
325,996 + AO356_01415 0.47 +0.5
325,997 - AO356_01415 0.47 +1.7
325,997 - AO356_01415 0.47 +1.3
325,997 - AO356_01415 0.47 -0.5
325,997 - AO356_01415 0.47 +1.1
325,997 - AO356_01415 0.47 +0.4
325,997 - AO356_01415 0.47 +0.3
325,997 - AO356_01415 0.47 +0.3
325,997 - AO356_01415 0.47 -0.6
326,436 + AO356_01420 0.40 +0.7
326,436 + AO356_01420 0.40 +0.6
326,436 + AO356_01420 0.40 -0.1
326,437 - AO356_01420 0.40 +0.4
326,437 - AO356_01420 0.40 -1.3
326,437 - AO356_01420 0.40 +0.7
326,437 - AO356_01420 0.40 +0.7
326,437 - AO356_01420 0.40 -0.2
326,658 - AO356_01420 0.85 +1.0
326,658 - AO356_01420 0.85 +0.3
326,661 - AO356_01420 0.85 +0.0
327,203 + AO356_01425 0.38 +0.8
327,203 + AO356_01425 0.38 +0.1
327,204 - AO356_01425 0.38 -0.9
327,253 + AO356_01425 0.43 -0.7
327,254 - AO356_01425 0.44 -0.4
327,374 - AO356_01425 0.56 -1.1
327,436 + AO356_01425 0.63 +0.1
327,437 - AO356_01425 0.63 -0.3
327,437 - AO356_01425 0.63 -0.3
327,437 - AO356_01425 0.63 +2.7
327,437 - AO356_01425 0.63 +0.1
327,499 + AO356_01425 0.70 -0.0
327,644 - AO356_01425 0.85 -0.0

Or see this region's nucleotide sequence